Protein Alignment shep and PABPC3

DIOPT Version :9

• Sequence 1: NP_001246636.1
• Gene: shep / 38605
• FlyBaseID: FBgn0052423
• Length: 590
• Species: Drosophila melanogaster
• Sequence 2: NP_112241.2
• Gene: PABPC3 / 5042
• HGNCID: 8556
• Length: 631
• Species: Homo sapiens
• Alignment Length: 428
• Identity: 93/428 - (21%)
• Similarity: 159/428 - (37%)
• Gaps: 124/428 - (28%)

  Fly   244 NLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQG-- 306
            |::::.|.:...:|.|.:..:.:|.|:|...:.|:  |..||||||.||....||.|:|.:.|
Human   100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGML 162

  Fly   307 --------------KGVQAQMAKQQEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQ 357
                          |..:|::..:.::.| |:||.|......:..|:.:..|:|..:|.:::.|:
Human   163 LNGRKVFVGQFKSRKEREAELGARAKEFP-NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226

  Fly   358 QMNSKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKK---------------- 406
            ...|||.||...|..|..::.:...||..:.|.:  :.|    |..:||
Human   227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ--IYV----GRAQKKVERQTELKRTFEQMKQ 285

  Fly   407 ---------NLF-KTPDPNARAWRDVSAEGIPVAYDP--TMQQNGVSVNVGTPIGVPYSRFSAP- 458
                     ||: |..|..      :..|.:..|:.|  |:....|.:..|...|..:..||:|
Human   286 DRITRYQVVNLYVKNLDDG------IDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPE 344

  Fly   459 -------QVGGYPVAGSQWIPGYMMTQVDDQTSYSPQYMQMAA---------APPLG-------- 499
                   ::.|..||...........:.:.|...:.:|||..|         |||.|
Human   345 EATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQ 409

  Fly   500 ----VTSYKPEAVNQVQP------RGI---------SMMVSGDTGVPYGTMMPQ-------LATL 538
                ...|.|..:.:::|      :|.         |.:..|...||:.||.|.       ::|.
Human   410 TQNHAAYYPPSQIARLRPSPRWTAQGARPHPFQNKPSAIRPGAPRVPFSTMRPASSQVPRVMSTQ 474

  Fly   539 QIGNSYISPTYPYYAPPPTIIPTMPMTDSEQASTAASP 576
            ::.|              |...|:....:..|:.||:|
Human   475 RVAN--------------TSTQTVGPRPAAAAAAAATP 498

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
shep	NP_001246636.1	RRM1_MSSP	243..313	CDD:240689	24/84 (29%)
		RRM2_MSSP	322..400	CDD:240690	20/77 (26%)
PABPC3	NP_112241.2	PABP-1234	11..610	CDD:130689	93/428 (22%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
User_Submission	0	0.000	Not matched by this tool.
	1	0.910