Protein Alignment shep and pabpc1

DIOPT Version :10

• Sequence 1: NP_001246636.1
• Gene: shep / 38605
• FlyBaseID: FBgn0052423
• Length: 590
• Species: Drosophila melanogaster
• Sequence 2: NP_001005051.1
• Gene: pabpc1 / 448595
• XenbaseID: XB-GENE-963457
• Length: 634
• Species: Xenopus tropicalis
• Alignment Length: 471
• Identity: 106/471 - (22%)
• Similarity: 160/471 - (33%)
• Gaps: 142/471 - (30%)

  Fly   244 NLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQG-- 306
            |::|:.|.:...:|.|.:..:.:|.|:|.|.:.|:  |..||||||.||....||.|:..:.|
 Frog   100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGML 162

  Fly   307 ----KGVQAQMAKQQEQDP---------TNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQ 358
                |....:...::|::.         ||:||.|......:..|:.|..|||..:|.:::.|..
 Frog   163 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDN 227

  Fly   359 MNSKGVGFARMESREKCEQIIQMFNGNTIPG-------------------------AKD------ 392
            ..|||.||...|..|..::.:...||..:.|                         .:|
 Frog   228 GKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ 292

  Fly   393 --PLLVKFADGGPKKKNL-----------------------------FKTPDPNARAWRDVSAEG 426
              .|.||..|.|...:.|                             |.:|:...:|..:::  |
 Frog   293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN--G 355

  Fly   427 IPVAYDP----------------TMQ--QNGVSVNVGTPIGVPYSRFSAPQVGGYPVA------- 466
            ..||..|                |.|  |...||.|..|:..||.    |....|.:|
 Frog   356 RIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPNPVINPYQ----PPPSSYFMAAIPPAQN 416

  Fly   467 -GSQWIPGYMMTQVDDQTSYSPQYMQMAAAP----------------PLGVTSYKPEAVNQVQPR 514
             .:.:.||.:.     |...||::....|.|                |...::.:| |.||| ||
 Frog   417 RAAYYPPGQIA-----QLRPSPRWTAQGARPHPFQNMPGAIRPTAPRPPTFSTMRP-ASNQV-PR 474

  Fly   515 GISMMVSGDTGVPYGTMMPQLATLQIGNSYISPTYPYY------APPPTIIPTMPMTDSEQASTA 573
            .:|.....:|...  ||.|:..|.....:....|.|.|      ..|...:.|.|....:|.:..
 Frog   475 VVSAQRVANTSTQ--TMGPRPTTAAAAATSAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVH 537

  Fly   574 ASPDEAYTQYPHQAAP 589
            ....|..|.....|||
 Frog   538 VQGQEPLTASMLAAAP 553

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
shep	NP_001246636.1	RRM_SF	240..321	CDD:473069	25/82 (30%)
		RRM2_MSSP	322..400	CDD:409690	26/110 (24%)
pabpc1	NP_001005051.1	PABP-1234	11..614	CDD:130689	106/471 (23%)