DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment shep and mod

DIOPT Version :9

Sequence 1:	NP_001246636.1	Gene:	shep / 38605	FlyBaseID:	FBgn0052423	Length:	590	Species:	Drosophila melanogaster
Sequence 2:	NP_001247401.1	Gene:	mod / 43764	FlyBaseID:	FBgn0002780	Length:	542	Species:	Drosophila melanogaster

Alignment Length:	184	Identity:	36/184 - (19%)
Similarity:	72/184 - (39%)	Gaps:	33/184 - (17%)

- Green bases have known domain annotations that are detailed below.

  Fly   214 SNTTNTNTNMG---------PNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTI 269
            :|:..:..|.|         |.||.:||           .:::..|......||||.:.|::|.:
  Fly   148 ANSEKSEENRGIPKVKVGKIPLGTPKNQ-----------IVFVTNLPNEYLHKDLVALFAKFGRL 201

  Fly   270 ISTKAILDKTTNKCKGYGFVDFEQPAFAECAV----KGLQ-GKGV--QAQMAKQQEQDPTNLYIA 327
            .:.:...:...||..   .:.|:....||..:    |.|. |..|  .:|...::|.:...:.:.
  Fly   202 SALQRFTNLNGNKSV---LIAFDTSTGAEAVLQAKPKALTLGDNVLSVSQPRNKEENNERTVVVG 263

  Fly   328 NLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQM 381
            .:.|:..:.||:....|...|.:..|..::.|..   .|.|:.|.:...:.:::
  Fly   264 LIGPNITKDDLKTFFEKVAPVEAVTISSNRLMPR---AFVRLASVDDIPKALKL 314

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
shep	NP_001246636.1	RRM1_MSSP	243..313	CDD:240689	16/76 (21%)
shep	NP_001246636.1	RRM2_MSSP	322..400	CDD:240690	10/60 (17%)
mod	NP_001247401.1	RRM_SF	177..244	CDD:302621	15/69 (22%)
		RRM_SF	260..327	CDD:240668	10/58 (17%)
		RRM_SF	342..411	CDD:240668
		RRM_SF	422..>465	CDD:302621
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45439595
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.930