Protein Alignment shep and CG5213

DIOPT Version :9

• Sequence 1: NP_001246636.1
• Gene: shep / 38605
• FlyBaseID: FBgn0052423
• Length: 590
• Species: Drosophila melanogaster
• Sequence 2: NP_650473.1
• Gene: CG5213 / 41892
• FlyBaseID: FBgn0038345
• Length: 251
• Species: Drosophila melanogaster
• Alignment Length: 198
• Identity: 59/198 - (29%)
• Similarity: 88/198 - (44%)
• Gaps: 19/198 - (9%)

  Fly   242 KTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGL-- 304
            ||||.:..|.|..|:.:|..:.:::|.|...|.|..:.|.....|||||:.....|..||.|:
  Fly    40 KTNLILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGISCCYGFVDYVSERQAAAAVNGMDG 104

  Fly   305 ---QGKGVQAQMAKQQEQDPT--NLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMN-SKG 363
               :||.::...|:..|.:.|  :||:.|||.:..|..:..:.:.||.:|...:||.:..| |:|
  Fly   105 YETRGKRLKVAFARPSEYESTSSSLYVGNLPTYMDEKKVRELFATYGNIVDVNLLRHKFNNRSRG 169

  Fly   364 VGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFAD-----------GGPKKKNLFKTPDPNAR 417
            |.|.:.|.....|......:...|.||..||.|||.:           |...|.....:|.|..|
  Fly   170 VAFLQFELVRDAEVAKYGMDRYMIEGASRPLTVKFVEREKKGSSSTSSGSQYKDKRKSSPPPYKR 234

  Fly   418 AWR 420
            ..|
  Fly   235 RER 237

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
shep	NP_001246636.1	RRM1_MSSP	243..313	CDD:240689	23/74 (31%)
		RRM2_MSSP	322..400	CDD:240690	27/80 (34%)
CG5213	NP_650473.1	RRM1_Hu_like	41..117	CDD:240821	23/75 (31%)
		RRM	128..202	CDD:214636	23/73 (32%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45439576
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.840