Protein Alignment shep and cocoon

DIOPT Version :9

• Sequence 1: NP_001246636.1
• Gene: shep / 38605
• FlyBaseID: FBgn0052423
• Length: 590
• Species: Drosophila melanogaster
• Sequence 2: NP_001261874.1
• Gene: cocoon / 39665
• FlyBaseID: FBgn0036496
• Length: 318
• Species: Drosophila melanogaster
• Alignment Length: 210
• Identity: 42/210 - (20%)
• Similarity: 78/210 - (37%)
• Gaps: 47/210 - (22%)

  Fly   215 NTTNTNTNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKT 279
            |...:..|: .|.|.:.:..:.  .|...:|.:.||...||::||......||.::..:...|..
  Fly    82 NKRQSEDNL-ENSTAKTKRTEA--HLRCFDLIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTR 143

  Fly   280 TNKCKGYGFV-----DFEQPAFAE--------CAVKGLQGKGVQAQMAKQQEQDPTNLYIANLPP 331
            :...||:|||     |.:....::        |.||....:|:       ..|:|..:::.....
  Fly   144 SGHSKGFGFVRFGSYDVQMHVLSKRHSIDGRWCEVKVPASRGM-------GNQEPGKVFVGRCTE 201

  Fly   332 HFKETDLEAMLSKYGQVVST--------------------RILRDQQMNSKGVGF----ARMESR 372
            ..:..||....||:|:|:..                    |::..::...|||..    |..::.
  Fly   202 DIEADDLREYFSKFGEVIDVFIPKPFRAFSFVTFLDPYVPRVVCGEKHIIKGVSVHVSTADKKNV 266

  Fly   373 EKCEQIIQMFNGNTI 387
            :...|:.|..|.|.:
  Fly   267 QNKNQLFQTNNYNNL 281

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
shep	NP_001246636.1	RRM1_MSSP	243..313	CDD:240689	20/82 (24%)
		RRM2_MSSP	322..400	CDD:240690	15/90 (17%)
cocoon	NP_001261874.1	RRM1_TDP43	108..184	CDD:240767	19/75 (25%)
		RRM2_TDP43	193..262	CDD:240768	10/68 (15%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45439594
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.930