DRSC/TRiP Functional Genomics Resources

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Protein Alignment shep and cocoon

DIOPT Version :10

Sequence 1:NP_001246636.1 Gene:shep / 38605 FlyBaseID:FBgn0052423 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_648764.1 Gene:cocoon / 39665 FlyBaseID:FBgn0036496 Length:318 Species:Drosophila melanogaster


Alignment Length:210 Identity:42/210 - (20%)
Similarity:78/210 - (37%) Gaps:47/210 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   215 NTTNTNTNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKT 279
            |...:..|: .|.|.:.:..:.  .|...:|.:.||...||::||......||.::..:...|..
  Fly    82 NKRQSEDNL-ENSTAKTKRTEA--HLRCFDLIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTR 143

  Fly   280 TNKCKGYGFV-----DFEQPAFAE--------CAVKGLQGKGVQAQMAKQQEQDPTNLYIANLPP 331
            :...||:|||     |.:....::        |.||....:|:       ..|:|..:::.....
  Fly   144 SGHSKGFGFVRFGSYDVQMHVLSKRHSIDGRWCEVKVPASRGM-------GNQEPGKVFVGRCTE 201

  Fly   332 HFKETDLEAMLSKYGQVVST--------------------RILRDQQMNSKGVGF----ARMESR 372
            ..:..||....||:|:|:..                    |::..::...|||..    |..::.
  Fly   202 DIEADDLREYFSKFGEVIDVFIPKPFRAFSFVTFLDPYVPRVVCGEKHIIKGVSVHVSTADKKNV 266

  Fly   373 EKCEQIIQMFNGNTI 387
            :...|:.|..|.|.:
  Fly   267 QNKNQLFQTNNYNNL 281

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shepNP_001246636.1 RRM_SF 240..321 CDD:473069 22/93 (24%)
RRM2_MSSP 322..400 CDD:409690 15/90 (17%)
cocoonNP_648764.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 19/72 (26%)
RRM2_TDP43 193..262 CDD:409761 10/68 (15%)
Blue background indicates that the domain is not in the aligned region.

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