Protein Alignment shep and CG1316

DIOPT Version :9

• Sequence 1: NP_001246636.1
• Gene: shep / 38605
• FlyBaseID: FBgn0052423
• Length: 590
• Species: Drosophila melanogaster
• Sequence 2: NP_647887.1
• Gene: CG1316 / 38526
• FlyBaseID: FBgn0035526
• Length: 470
• Species: Drosophila melanogaster
• Alignment Length: 418
• Identity: 85/418 - (20%)
• Similarity: 141/418 - (33%)
• Gaps: 119/418 - (28%)

  Fly   235 QGGEQLSK------TNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQ 293
            :||::.|.      :.|:|. ..:..|::|.....:.||.|.....:.||.|.:.||..:|.|.:
  Fly    14 RGGQEYSNDDDPPMSRLFII-CNKAHTEEDFREAFSPYGEIEDIWVVKDKHTQENKGIAYVKFSK 77

  Fly   294 PAFAECAVKGLQGKGV----------------QAQMAKQQEQDP-TNLYIANLPPHFKETDLEAM 341
            .:.|..|.:.:.||.:                |.....:.||:. ..|:|. :|....|.|:...
  Fly    78 TSDAAKAQEEMNGKTIGKMDRTLKVLVAANRNQGSNKSENEQEKYVRLFIV-IPKTATEEDIREE 141

  Fly   342 LSKYGQVVSTRILRDQQM-NSKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKK 405
            .|::|.|.|..|::::.. |.||.|:.|.......                   .|.|.:...|.
  Fly   142 FSQWGDVESVTIVKEKNNGNPKGFGYVRFTKFYYA-------------------AVAFENCSAKY 187

  Fly   406 KNLFKTPDPNARAWRDVSAEGIPVAYDPTMQQNG---VSVNVGTPIGVPYSRFSAPQVGGYPVAG 467
            |.:|..|..:.|..||  ..|.|...:|....:|   .:.|.|.         |:...||.....
  Fly   188 KAVFAEPKGSTRTQRD--QYGRPSEDNPLYSSSGRGNSNFNGGG---------SSSGGGGSNSYN 241

  Fly   468 SQWIPGYMMTQVDDQTSYSPQYMQMAAAPPLGVTSYKPEAVNQVQ-------------------- 512
            :.|    .::|.:|..::. :...:..|.|..:.......|||.|
  Fly   242 NDW----NVSQNNDMAAFL-RMQNVPVAQPSCLEVNVSNCVNQDQLWRLFDIIPGLDYCQIMREH 301

  Fly   513 -PRGISMMVSGDT------------GVPYG------TMMPQLATLQIGNSYISPTYPYYA----P 554
             ||....:|..|.            |:.|.      ..:..:::.::..|:|.......|    |
  Fly   302 GPRTNEALVVYDNPEAAIYAKDKLHGLEYPMGERIIVKVNGMSSARMDTSFIDKRTKKDAICNVP 366

  Fly   555 PPTIIPTMPMTDSEQASTAASPDEAYTQ 582
            .|   ||.|:         ||||:...|
  Fly   367 LP---PTQPL---------ASPDDQVAQ 382

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
shep	NP_001246636.1	RRM1_MSSP	243..313	CDD:240689	19/85 (22%)
		RRM2_MSSP	322..400	CDD:240690	17/78 (22%)
CG1316	NP_647887.1	RRM1_RBM45	25..105	CDD:240812	18/80 (23%)
		RRM2_RBM45	122..195	CDD:240813	20/92 (22%)
		RRM3_RBM45	267..339	CDD:240814	10/71 (14%)
		RRM4_RBM45	383..449	CDD:240815	85/418 (20%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45439596
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.930