Protein Alignment shep and TBPH

DIOPT Version :9

• Sequence 1: NP_001246636.1
• Gene: shep / 38605
• FlyBaseID: FBgn0052423
• Length: 590
• Species: Drosophila melanogaster
• Sequence 2: NP_001163280.1
• Gene: TBPH / 37781
• FlyBaseID: FBgn0025790
• Length: 531
• Species: Drosophila melanogaster
• Alignment Length: 374
• Identity: 76/374 - (20%)
• Similarity: 122/374 - (32%)
• Gaps: 91/374 - (24%)

  Fly   215 NTTNTNTNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKT 279
            |...::.|: .|.|.:.:..:  .:|..|:|.:.||...||::.|......||.::..:...|..
  Fly    82 NKRKSDDNL-ENSTAKTKRIE--TRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTK 143

  Fly   280 TNKCKGYGFV-----DFEQPAFAE--------CAVKGLQGKGVQAQMAKQQEQDPTNLYIANLPP 331
            :.:.||:|||     |.:......        |.||....||:..|:       |..:::.....
  Fly   144 SGQSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEVKVPNSKGMGHQV-------PCKVFVGRCTE 201

  Fly   332 HFKETDLEAMLSKYGQVVSTRILRDQQMNS--------------------KGVGFARMESREKCE 376
            .....||....||:|:|....|.|..:..|                    |||......:..|.|
  Fly   202 DINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLDPDVAQSLCGEDHIIKGVSVHVSNAAPKAE 266

  Fly   377 ----QIIQMFNGNTIPGAKDPLLVKFADGGPKKKNLFKTPDPNA--RAWRDVSAEGIPVAYDPTM 435
                |.:|.:|.|:..        .|.......:.....|..|.  |.....:|.|...|..|.
  Fly   267 QNRNQQVQSYNYNSAN--------SFGMHSYHPQGNHMNPGRNGHHRGNNQHNAHGGENAIVPN- 322

  Fly   436 QQNGVSVNVGTP-IGVPYSRFSAPQVGGYPVAGSQWIPGYMMTQVDDQTSYSPQYMQMAAAPPLG 499
                 :.|:||. .|:..:.:.....|||...|.....|....:.|..:.|:.:
  Fly   323 -----NHNIGTAGYGMGGNNYGGNSGGGYHNNGGNHSSGGNTNRQDGGSQYNSR----------- 371

  Fly   500 VTSYKPEAVNQVQPRGISMMVSGDTGVPYGTM------MPQLATLQIGN 542
                      |....|::...:|:.|...|.|      ||.|..|.|.:
  Fly   372 ----------QSNFHGMNQPHNGNVGGSNGWMNRGHLDMPNLQALGINS 410

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
shep	NP_001246636.1	RRM1_MSSP	243..313	CDD:240689	21/82 (26%)
		RRM2_MSSP	322..400	CDD:240690	19/101 (19%)
TBPH	NP_001163280.1	RRM1_TDP43	108..184	CDD:240767	18/75 (24%)
		RRM2_TDP43	192..261	CDD:240768	12/68 (18%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45439593
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.930