DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shep and pAbp

DIOPT Version :9

Sequence 1:NP_001246636.1 Gene:shep / 38605 FlyBaseID:FBgn0052423 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_476667.1 Gene:pAbp / 37070 FlyBaseID:FBgn0265297 Length:634 Species:Drosophila melanogaster


Alignment Length:543 Identity:120/543 - (22%)
Similarity:184/543 - (33%) Gaps:137/543 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   152 AYAAYTPHTATTPATTTVSF---LSQPVDYYWYGQRVP--------------------------T 187
            ||..:........|..|::|   .::|:...| .||.|                          |
  Fly    46 AYVNFQQPADAERALDTMNFDLVRNKPIRIMW-SQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDT 109

  Fly   188 AASPSNTNSS--SSSNTGSQSGTLSTSLSNTTNTNTNMGP-NGTVQN--------------QNQQ 235
            .::..|..|.  ::...|:..|............||::.. ||.:.|              :.::
  Fly   110 FSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKE 174

  Fly   236 GGEQLSK-TNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAEC 299
            .||:... ||:|::...:...|:.|......||.|.|.| ::.|...|.||:|||.||....||.
  Fly   175 LGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYK-VMSKEDGKSKGFGFVAFETTEAAEA 238

  Fly   300 AVKGLQGKGV---------QAQMAKQQEQD-----------------PTNLYIANLPPHFKETDL 338
            ||:.|.||.:         :||...:::|:                 ..|||:.||.....:..|
  Fly   239 AVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRL 303

  Fly   339 EAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFAD--- 400
            ....|.||.:.|.:::.|::..|||.||....:..:....:...||..: |:| ||.|..|.   
  Fly   304 RIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVV-GSK-PLYVALAQRKE 366

  Fly   401 --------------GGPKKKNLFKTPDPNARAWRDVSAEGIPVAYDPTMQQN----GVSVNV--- 444
                          .|.:.:.|.:...|||       |.|.   :.||:..|    |..|..   
  Fly   367 ERKAHLASQYMRHMTGMRMQQLGQIYQPNA-------ASGF---FVPTLPSNQRFFGSQVATQMR 421

  Fly   445 GTPIGVPYSR----FSAPQVGGYPVAGSQWIPGYMMTQVDDQTSYSPQYMQMAAAPPLGVTSYKP 505
            .||..||..|    ....|.|.....|.|...|.:.||.....:.:     ..|.|.:..|....
  Fly   422 NTPRWVPQVRPPAAIQGVQAGAAAAGGFQGTAGAVPTQFRSAAAGA-----RGAQPQVQGTHAAA 481

  Fly   506 EAVNQVQPRGISMMVSGDTGVPYGTMMPQLATLQIGNSYISPTYPYYA-----PPPTIIPTMPMT 565
            .|.|.::..|...:....|..|  .|....|.:..|....:..|.|.:     |.|.:..|.|:.
  Fly   482 AAANNMRNTGARAITGQQTAAP--NMQIPGAQIAGGAQQRTSNYKYTSNMRNPPVPQLHQTQPIP 544

  Fly   566 DSEQASTA----------ASPDE 578
            ...|...:          |.|.|
  Fly   545 QQLQGKNSEKLIASLLANAKPQE 567

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shepNP_001246636.1 RRM1_MSSP 243..313 CDD:240689 27/78 (35%)
RRM2_MSSP 322..400 CDD:240690 23/77 (30%)
pAbpNP_476667.1 PABP-1234 2..625 CDD:130689 120/543 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439589
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24012
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

Return to query results.
Submit another query.