Protein Alignment shep and Elavl1

DIOPT Version :9

• Sequence 1: NP_001246636.1
• Gene: shep / 38605
• FlyBaseID: FBgn0052423
• Length: 590
• Species: Drosophila melanogaster
• Sequence 2: NP_001102318.1
• Gene: Elavl1 / 363854
• RGDID: 1308649
• Length: 326
• Species: Rattus norvegicus
• Alignment Length: 260
• Identity: 82/260 - (31%)
• Similarity: 128/260 - (49%)
• Gaps: 33/260 - (12%)

  Fly   226 NGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVD 290
            ||...:..:...:.:.:|||.:..|.|..|.::|.::.:..|.:.|.|.|.||......|||||:
  Rat     3 NGYEDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVN 67

  Fly   291 FEQPAFAECAVKGLQGKGVQAQMAKQQEQDPT-------NLYIANLPPHFKETDLEAMLSKYGQV 348
            :.....||.|:..|.|..:|::..|.....|:       ||||:.||....:.|:|.|.|::|::
  Rat    68 YVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRI 132

  Fly   349 VSTRILRDQQMN-SKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKKN----- 407
            :::|:|.||... |:||.|.|.:.|.:.|:.|..|||:..||:.:|:.||||....:.||
  Rat   133 INSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNMALLS 197

  Fly   408 -LFKTPDPNARAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPIGVPY-SRFSAPQVGGYPVAGSQW 470
             |:.:|   ||.:      |.||.:.  .|:...|     |:||.: |..|...|.|.  |.|.|
  Rat   198 QLYHSP---ARRF------GGPVHHQ--AQRFRFS-----PMGVDHMSGISGVNVPGN--ASSGW 244

  Fly   471  470
              Rat   245  244

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
shep	NP_001246636.1	RRM1_MSSP	243..313	CDD:240689	24/69 (35%)
		RRM2_MSSP	322..400	CDD:240690	32/85 (38%)
Elavl1	NP_001102318.1	ELAV_HUD_SF	19..326	CDD:273741	80/244 (33%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D614259at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.920