Protein Alignment shep and Rbms1

DIOPT Version :10

• Sequence 1: NP_001246636.1
• Gene: shep / 38605
• FlyBaseID: FBgn0052423
• Length: 590
• Species: Drosophila melanogaster
• Sequence 2: XP_006234296.1
• Gene: Rbms1 / 362138
• RGDID: 1307777
• Length: 421
• Species: Rattus norvegicus
• Alignment Length: 472
• Identity: 181/472 - (38%)
• Similarity: 230/472 - (48%)
• Gaps: 108/472 - (22%)

  Fly   148 LPQPAYAAYTPHTATTPATTTVSFLSQPVDYYWYGQRVPTAASPSNTNSSSSSNTGSQSGTLSTS 212
            |||.:.....|....:|:||:                       ||.|||||||:
  Rat    25 LPQQSLVPAHPMAPPSPSTTS-----------------------SNNNSSSSSNS---------- 56

  Fly   213 LSNTTNTNTNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILD 277
                                   |.:||||||||||||...|||:|||.:|..||.|:|||||||
  Rat    57 -----------------------GWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 98

  Fly   278 KTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKQQEQDPTNLYIANLPPHFKETDLEAML 342
            |.||||||||||||:.||.|:.||..|:..|||||||||||||||||||:|||....|.:||.||
  Rat    99 KATNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENML 163

  Fly   343 SKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNG---NTIPGAK---DPLLVKFADG 401
            ..:|||:|||:|||....|:|||||||||.||||.:|..|||   .|.||..   :|||.|||||
  Rat   164 KPFGQVISTRVLRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADG 228

  Fly   402 GPKKKNLFKTPD---PNARAWRDVSAEGIPVAYDPTMQ--QNGVSVNVGTPIGVPYSR------- 454
            |.||:   :.|:   ||.|.|......|:.:.||||..  .||.   ..:|..:..:|
  Rat   229 GQKKR---QNPNKYIPNGRPWPREGEAGMTLTYDPTTAALHNGF---YPSPYSIATNRMITQTSL 287

  Fly   455 --FSAPQVGGYPVAGSQWIPGYMMTQVDDQTSYSPQYMQ----------MAAAPPLGVT-SYKPE 506
              :.|..|..|.||.......|....:..|   ||.:||          ....|.:..| |.:|.
  Rat   288 TPYIASPVSAYQVAKETREKKYRGPALKVQ---SPSWMQPQPYILQHPGAVLTPSMEHTMSLQPA 349

  Fly   507 AVNQVQPRGISMMVSGDTGVPYGTMMPQLATLQIGNSYISPTYPYYAPPPT-IIPTMPMTDSEQA 570
            ::.....:.:|.:..|.|    ||.||..:.:|  .:|:    |.|....| .:|....:..:|.
  Rat   350 SMISPLAQQMSHLSLGST----GTYMPATSAMQ--GAYL----PQYTHMQTATVPVEEASGQQQV 404

  Fly   571 STAASPDEA-YTQYPHQ 586
            :...|.|.: ||..|::
  Rat   405 TVETSNDHSPYTFPPNK 421

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
shep	NP_001246636.1	RRM_SF	240..321	CDD:473069	59/80 (74%)
		RRM2_MSSP	322..400	CDD:409690	48/83 (58%)
Rbms1	XP_006234296.1	RRM1_MSSP1	57..142	CDD:409900	61/84 (73%)
		half-pint	<86..>376	CDD:130706	133/302 (44%)
		RRM2_MSSP1	143..227	CDD:409903	48/83 (58%)