DRSC/TRiP Functional Genomics Resources

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Protein Alignment shep and rbm14a

DIOPT Version :10

Sequence 1:NP_001246636.1 Gene:shep / 38605 FlyBaseID:FBgn0052423 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_001108616.1 Gene:rbm14a / 323721 ZFINID:ZDB-GENE-050522-496 Length:471 Species:Danio rerio


Alignment Length:477 Identity:94/477 - (19%)
Similarity:158/477 - (33%) Gaps:149/477 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   241 SKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGL- 304
            |...|::..|...||..||:.:.|.:|.::....:        :.:.||..:....|:.|::.| 
Zfish     5 SAVKLFVGNLDLETTQDDLIALFAPFGEVVHITVL--------RQFAFVHLQGEGAADSAIRDLN 61

  Fly   305 ----QGKGVQAQMAKQQEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVG 365
                :|:.:..:.:|.:..:.|.:::.||.......||..:.|.||:|:....::.:..:..|..
Zfish    62 GREYRGRSLVVEESKGRPLNSTKVFVGNLCASCSVEDLYDLFSPYGKVLDCDKVKTKPSSLTGYA 126

  Fly   366 FARMESREKCEQIIQMFNGNTIPGAKDPLLVK---------------------FADGGPKKKNLF 409
            |..||.:|..||.|:..:|.|..|.  ||.|:                     ||...|..:...
Zfish   127 FVYMEHKEDAEQAIEGLHGTTFMGR--PLAVELSKVQQSTNKVPCASCGAHGHFAGECPINRPPM 189

  Fly   410 KTPDPNAR--AWRDVSAEGIPVAYDPTMQQNGVSVNVGTPIGVPYSRFSAPQVGGYPVAGSQWIP 472
            :.....|.  |....:|.|:|:....::..:..:.....|........:..:|.|.||  |..:.
Zfish   190 EHHQSQAAVLAAAAAAAAGLPLQVQQSVHNSFYNTASSDPTFAALKDLTTSRVDGKPV--SSMVY 252

  Fly   473 GYMMTQ----VDDQ----TSYSPQ-YMQMAAAPPLGVTSY------------------------- 503
            |.:.:|    |.||    ||.:.: |...|.||| || :|                         
Zfish   253 GALASQVYSSVADQVIGSTSQTAEGYPTEAEAPP-GV-AYGTEPDPHTLFEAARARFFEQGQQVL 315

  Fly   504 --------------------------KPEAVNQVQPRGISMMVSGDTGVPYGTMMP--------- 533
                                      .|:..:|.:|:..:::.:    .|.|..:|         
Zfish   316 AEQQAVTKSDRDRSPIRRTAPLLPDPSPQQFSQARPKRRALLPT----PPGGPELPPVKNGDPIA 376

  Fly   534 --------------QLATLQIGNSYISPTYPYYAPPPTIIPTMPM-----TDSEQ--ASTAASPD 577
                          |....|..:.|....|.|..|||.....|||     .|.:|  |...:.|.
Zfish   377 RCYAEYYQQYQQYQQYQQYQQYHQYHQYQYNYPPPPPPPPAPMPMMPPGPMDVQQMMAPGTSIPP 441

  Fly   578 EAY-------------TQYPHQ 586
            ..|             ..||||
Zfish   442 RVYEPTPTHKEPLLRRPDYPHQ 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shepNP_001246636.1 RRM_SF 240..321 CDD:473069 16/84 (19%)
RRM2_MSSP 322..400 CDD:409690 24/98 (24%)
rbm14aNP_001108616.1 RRM_SF 7..75 CDD:473069 14/75 (19%)
RRM_SF 84..156 CDD:473069 21/73 (29%)

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