DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shep and ssx

DIOPT Version :10

Sequence 1:NP_001246636.1 Gene:shep / 38605 FlyBaseID:FBgn0052423 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_569908.1 Gene:ssx / 31086 FlyBaseID:FBgn0024987 Length:485 Species:Drosophila melanogaster


Alignment Length:254 Identity:76/254 - (29%)
Similarity:112/254 - (44%) Gaps:45/254 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   192 SNTNSSSSSNTGSQSGTLSTSLSNTTNTNTNM------GPNG----------------------- 227
            |:....|..|.|...||     .:..::|.||      |.||                       
  Fly    17 SSDIEGSGDNVGRDDGT-----DDDDDSNGNMQQENGDGGNGGDGQEHSGDEEQHHSQDNEGNDN 76

  Fly   228 -TVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDF 291
             ..|.|..|..::.|.|||.|..|.|..||::|.|:.:..|.|.:.|.:.|..|....||||||:
  Fly    77 SAGQQQQMQQVDRTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDY 141

  Fly   292 EQPAFAECAVKGLQGKGVQAQMAKQQEQDP-------TNLYIANLPPHFKETDLEAMLSKYGQVV 349
            :..:.:|.|::.|.|..|:.:..|.....|       ||||:.||..:..:..|:.:.|.||.:|
  Fly   142 KTESDSEDAIQKLNGFYVRNKRLKVSYARPGGQSIKDTNLYVINLSRNINDDMLDRIFSPYGLIV 206

  Fly   350 STRILRDQQM-NSKGVGFARMESREKCEQIIQMFNGNTIP-GAKDPLLVKFADGGPKKK 406
            ...||||:.. ..:||.|.|...||:.::.|:..| ||:| |...|:.|:.|:...|.|
  Fly   207 QRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALN-NTVPEGGSQPIWVRLAEEHGKAK 264

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shepNP_001246636.1 RRM_SF 240..321 CDD:473069 28/80 (35%)
RRM2_MSSP 322..400 CDD:409690 29/79 (37%)
ssxNP_569908.1 sex-lethal <76..272 CDD:273740 64/190 (34%)

Return to query results.
Submit another query.