DRSC/TRiP Functional Genomics Resources

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Protein Alignment shep and elav

DIOPT Version :9

Sequence 1:NP_001246636.1 Gene:shep / 38605 FlyBaseID:FBgn0052423 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_001245447.1 Gene:elav / 31000 FlyBaseID:FBgn0260400 Length:483 Species:Drosophila melanogaster


Alignment Length:515 Identity:130/515 - (25%)
Similarity:208/515 - (40%) Gaps:147/515 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 GGGGGVSMRGPSNAQQLPPQIPRSQNYSNGSSSSAAAAPLTSRSAFP--GAPLTASAVAL----- 85
            |.||||.    :.||.:.            |:::|||...|:.:|.|  .|...|:|..|     
  Fly     9 GAGGGVD----TQAQLMQ------------SAAAAAAVAATNAAAAPVQNAAAVAAAAQLQQQQV 57

  Fly    86 KGALPQRPPAMTSPAAAAAGAALAAGAPYRGAASWTPQGYAPAAAAAAAAVAQQAAYRYTAPLPQ 150
            :.|:.|.....|..|.|||.||:......:..|....|.........||||.||||.: .|.:||
  Fly    58 QQAILQVQQQQTQQAVAAAAAAVTQQLQQQQQAVVAQQAVVQQQQQQAAAVVQQAAVQ-QAVVPQ 121

  Fly   151 PAYAAYTPHTATTPATTTVSFLSQPVDYYWYGQRVPTAASPSNTNSSSSSNTGSQSGTLSTSLSN 215
            |..|                   ||                 |||.::.|  |||:|:       
  Fly   122 PQQA-------------------QP-----------------NTNGNAGS--GSQNGS------- 141

  Fly   216 TTNTNTNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDK-- 278
                      ||:.:          ::|||.:..|.|..|:.::.::.:..|.|.|.|.|.||  
  Fly   142 ----------NGSTE----------TRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQ 186

  Fly   279 -----------TTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKQQEQDPT-------NLY 325
                       :..:..|||||::.:|..||.||..|.|..:|.:..|.....|:       |||
  Fly   187 VYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLY 251

  Fly   326 IANLPPHFKETDLEAMLSKYGQVVSTRILRD--QQMNSKGVGFARMESREKCEQIIQMFNGNTIP 388
            ::.||....:.:|||:.:.:|.::::|||::  ....:|||||.|.:.||:..:.|...||.|..
  Fly   252 VSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGTTPS 316

  Fly   389 GAKDPLLVKFADGGPKKKNLFKTPDPNARAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPIGVPYS 453
            ...||::|||::          ||...::    :....:|...:|.:.:. :...:.||:....:
  Fly   317 SCTDPIVVKFSN----------TPGSTSK----IIQPQLPAFLNPQLVRR-IGGAMHTPVNKGLA 366

  Fly   454 RFSAPQVGGYPVAGSQ---WIPGYMMTQVDDQTSYSPQYMQMAAAP----PLGVTSYKPE 506
            |||       |:||..   .:|..:.......|:       :|:.|    |:.:.:..||
  Fly   367 RFS-------PMAGDMLDVMLPNGLGAAAAAATT-------LASGPGGAYPIFIYNLAPE 412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shepNP_001246636.1 RRM1_MSSP 243..313 CDD:240689 26/82 (32%)
RRM2_MSSP 322..400 CDD:240690 29/86 (34%)
elavNP_001245447.1 ELAV_HUD_SF 146..483 CDD:273741 76/306 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D614259at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.920

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