Protein Alignment shep and elavl3

DIOPT Version :10

• Sequence 1: NP_001246636.1
• Gene: shep / 38605
• FlyBaseID: FBgn0052423
• Length: 590
• Species: Drosophila melanogaster
• Sequence 2: XP_009298008.1
• Gene: elavl3 / 30732
• ZFINID: ZDB-GENE-980526-76
• Length: 366
• Species: Danio rerio
• Alignment Length: 207
• Identity: 73/207 - (35%)
• Similarity: 113/207 - (54%)
• Gaps: 13/207 - (6%)

  Fly   208 TLSTSLSNTTNTNTNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIIST 272
            |:.|.:||.. :.|:: |||.|.:.|  |....|||||.:..|.|..|.::..::....|.|.|.
Zfish     7 TMETQVSNGP-SGTSL-PNGPVISTN--GATDDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESC 67

  Fly   273 KAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKQQEQDPT-------NLYIANLP 330
            |.:.||.|.:..|||||::..|..|:.|:..|.|..:|.:..|.....|:       |||::.||
Zfish    68 KLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLP 132

  Fly   331 PHFKETDLEAMLSKYGQVVSTRILRDQQMN--SKGVGFARMESREKCEQIIQMFNGNTIPGAKDP 393
            ....:.|:|.:.|:||:::::|||.||...  |:||||.|.:.|.:.|:.|:..||....||.:|
Zfish   133 KTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEP 197

  Fly   394 LLVKFADGGPKK 405
            :.||||:...:|
Zfish   198 ITVKFANNPSQK 209

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
shep	NP_001246636.1	RRM_SF	240..321	CDD:473069	27/80 (34%)
		RRM2_MSSP	322..400	CDD:409690	32/86 (37%)
elavl3	XP_009298008.1	ELAV_HUD_SF	35..365	CDD:273741	62/175 (35%)