Sequence 1: | NP_001246636.1 | Gene: | shep / 38605 | FlyBaseID: | FBgn0052423 | Length: | 590 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001099678.1 | Gene: | Pabpc6 / 292295 | RGDID: | 1311201 | Length: | 643 | Species: | Rattus norvegicus |
Alignment Length: | 447 | Identity: | 103/447 - (23%) |
---|---|---|---|
Similarity: | 164/447 - (36%) | Gaps: | 127/447 - (28%) |
- Green bases have known domain annotations that are detailed below.
Fly 244 NLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQG-- 306
Fly 307 --------------KGVQAQMAKQQEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQ 357
Fly 358 QMNSKGVGFARMESREKCEQIIQMFNGNTIPG-------------AKDPLLVKFADGGPKKKNLF 409
Fly 410 KTPDPNARAWRDVSAEGIPV----------------AYDP--TMQQNGVSVNVGTPIGVPYSRFS 456
Fly 457 AP--------QVGGYPVAGSQWIPGYMMTQVDDQTSYSPQYMQMAAAPPLGVTSYKPE-AVNQVQ 512
Fly 513 P-RGISMMVSGDTGVPYGTMMPQLATLQIGNSYISP------------------TYPYYAPPPTI 558
Fly 559 IP--TMPM------TDSE-------------------QASTAASP-DEAYTQYPHQA 587 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
shep | NP_001246636.1 | RRM1_MSSP | 243..313 | CDD:240689 | 24/84 (29%) |
RRM2_MSSP | 322..400 | CDD:240690 | 24/90 (27%) | ||
Pabpc6 | NP_001099678.1 | PABP-1234 | 11..622 | CDD:130689 | 103/447 (23%) |
RRM1_I_PABPs | 12..91 | CDD:240824 | |||
RRM2_I_PABPs | 97..172 | CDD:240825 | 22/73 (30%) | ||
RRM3_I_PABPs | 190..269 | CDD:240826 | 21/79 (27%) | ||
RRM4_I_PABPs | 303..380 | CDD:240827 | 12/76 (16%) | ||
PABP | 555..621 | CDD:279051 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.910 |