Protein Alignment shep and Elavl3

DIOPT Version :9

• Sequence 1: NP_001246636.1
• Gene: shep / 38605
• FlyBaseID: FBgn0052423
• Length: 590
• Species: Drosophila melanogaster
• Sequence 2: NP_758827.1
• Gene: Elavl3 / 282824
• RGDID: 628892
• Length: 367
• Species: Rattus norvegicus
• Alignment Length: 280
• Identity: 81/280 - (28%)
• Similarity: 130/280 - (46%)
• Gaps: 52/280 - (18%)

  Fly   225 PNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFV 289
            |||.:...|  |....|||||.:..|.|..|..:..::....|.|.|.|.:.||.|.:..|||||
  Rat    23 PNGPLLGTN--GATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFV 85

  Fly   290 DFEQPAFAECAVKGLQGKGVQAQMAKQQEQDPT-------NLYIANLPPHFKETDLEAMLSKYGQ 347
            ::..|..|:.|:..|.|..:|.:..|.....|:       |||::.||....:.::|.:.|:||:
  Rat    86 NYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGR 150

  Fly   348 VVSTRILRDQQMN-SKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKK----- 406
            ::::|||.||... |:||||.|.:.|.:.|:.|:..||....||.:|:.||||: .|.:|
  Rat   151 IITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFAN-NPSQKTGQAL 214

  Fly   407 --NLFKTPDPNARAWRDVSAEGIPVAYDPTMQQN---------GVSVNVGTPIGVPYSRFSAPQV 460
              :|:::   :||.:.           .|...|.         .::..|.:|:.: .:|||...:
  Rat   215 LTHLYQS---SARRYA-----------GPLHHQTQRFRLDNLLNMAYGVKSPLSL-IARFSPIAI 264

  Fly   461 GGYP----------VAGSQW 470
            .|..          .||:.|
  Rat   265 DGMSGLAGVGLSGGAAGAGW 284

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
shep	NP_001246636.1	RRM1_MSSP	243..313	CDD:240689	24/69 (35%)
		RRM2_MSSP	322..400	CDD:240690	31/85 (36%)
Elavl3	NP_758827.1	ELAV_HUD_SF	36..366	CDD:273741	76/265 (29%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D614259at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.920