DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shep and RBMS3

DIOPT Version :9

Sequence 1:NP_001246636.1 Gene:shep / 38605 FlyBaseID:FBgn0052423 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_001003793.1 Gene:RBMS3 / 27303 HGNCID:13427 Length:437 Species:Homo sapiens


Alignment Length:505 Identity:186/505 - (36%)
Similarity:231/505 - (45%) Gaps:139/505 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   143 RYTAPLPQPAYAAYTPHTATTPATTTVSFLSQPVDYYWYGQRVPTAASPSNTNSSSSSNTGSQSG 207
            |...|...|.|..|.||...|..:              |.......|.||.:.:|||:|      
Human     4 RLDQPQMYPQYTYYYPHYLQTKQS--------------YAPAPHPMAPPSPSTNSSSNN------ 48

  Fly   208 TLSTSLSNTTNTNTNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIIST 272
                                   :.|...||||||||||||||..||||:||:.:|..||.|:||
Human    49 -----------------------SSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVST 90

  Fly   273 KAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKQQEQDPTNLYIANLPPHFKETD 337
            ||||||.||:|||||||||:.||.|:.||..|:..|||||||||||||||||||:|||....|.:
Human    91 KAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQE 155

  Fly   338 LEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGN------TIPGAKDPLLV 396
            ||.||..:|.|:|||||||....|:|||||||||.||||.:||.|||.      .||...:|||.
Human   156 LENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLC 220

  Fly   397 KFADGGPKKKNLFKTPDPNARAWRDVSAEGIPVAYDPTMQ-QNGVSVNVGTPIGVPYSRFSAPQV 460
            ||||||.||:........|.|.|......|:.:.||||.. |||.              :|:|  
Human   221 KFADGGQKKRQNQSKYTQNGRPWPREGEAGMALTYDPTAAIQNGF--------------YSSP-- 269

  Fly   461 GGYPVAGSQWIPGYMMTQVDDQTSYSPQYMQMAAAPPLGV-----TSYKPEAVNQVQPRGISMMV 520
              |.:|.::.||         |||.:|    ..||.|:..     ||:.|.....:||.|..:..
Human   270 --YSIATNRMIP---------QTSITP----FIAASPVSTYQVQSTSWMPHPPYVMQPTGAVITP 319

  Fly   521 SGDTGV---PYGTMMP---QLATLQIGNS------------------YISP------TY-PYYAP 554
            :.|..:   |...|.|   |:..|.:|.:                  |::.      || |.|.|
Human   320 TMDHPMSMQPANMMGPLTQQMNHLSLGTTGTIQSQDRIMILHQLLCQYMTAAAPMQGTYIPQYTP 384

  Fly   555 ----------------PPTIIPTMPMTDSEQASTAA------SPDEAYTQ 582
                            |.|:.|:...|..:|...|.      :|..:|.|
Human   385 VPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHAPAYSYQQ 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shepNP_001246636.1 RRM1_MSSP 243..313 CDD:240689 47/69 (68%)
RRM2_MSSP 322..400 CDD:240690 48/83 (58%)
RBMS3NP_001003793.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 28..57 10/57 (18%)
RRM1_RBMS3 57..136 CDD:409902 56/78 (72%)
RRM2_RBMS3 139..226 CDD:240919 51/86 (59%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 399..437 9/36 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 95 1.000 Domainoid score I7413
eggNOG 1 0.900 - - E1_KOG4733
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 257 1.000 Inparanoid score I3155
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001320
OrthoInspector 1 1.000 - - otm41903
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24012
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X530
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
109.920

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