Protein Alignment shep and bru2

DIOPT Version :9

• Sequence 1: NP_001246636.1
• Gene: shep / 38605
• FlyBaseID: FBgn0052423
• Length: 590
• Species: Drosophila melanogaster
• Sequence 2: NP_001036356.1
• Gene: bru2 / 250811
• FlyBaseID: FBgn0262475
• Length: 893
• Species: Drosophila melanogaster
• Alignment Length: 674
• Identity: 139/674 - (20%)
• Similarity: 232/674 - (34%)
• Gaps: 208/674 - (30%)

  Fly    13 QQQQMGGPPHQQQGGGGGGGVSMRGPSNAQQLPPQIPRSQNY-----SNGSSSSAAAAPLT---- 68
            ||||      |||                ||.|..:|....|     |:|::|.|.||..|
  Fly    92 QQQQ------QQQ----------------QQHPQILPVKYEYLENLTSSGATSGAIAATTTFTGA 134

  Fly    69 ----------------SRSAFPGAPLTASAVALKGALPQRPPAM-----TSPAAAAAGAALAAGA 112
                            |.::......|.:|.|.|.:.......:     :||.|..|..|:||.:
  Fly   135 AKSFHPYLRPTGSGSNSNNSIAALSTTTAATAAKMSTTLFETLLHNQINSSPIALPAATAIAAIS 199

  Fly   113 PYRGAASWTPQGYAPAAAAAAAAVAQQ--AAYRYTAPLPQPAYAAYTPHTATTPATTTVSFLSQP 175
            ....||:.||...|.||||||||.:.|  ::......|.....|.    ...|||.
  Fly   200 AAATAATATPGTAATAAAAAAAAPSTQLNSSINSRTSLGDQGGAI----VVVTPAP--------- 251

  Fly   176 VDYYWYGQRVPTAASPSNTNSSSSSNTGSQSGTLSTSLSNTTNTNTNMGPNGTVQNQNQQGGEQL 240
                      |.||.|  |...:.:.:.::..::...|..:|:.:       ::::|     ...
  Fly   252 ----------PVAAPP--TGGPNRNQSPTRDCSVKMELMESTSPD-------SIKDQ-----PDA 292

  Fly   241 SKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECA----- 300
            ....:::..:.:...:..|..|..|:|.:.:...:.||.|:..:|..||.:.....|..|
  Fly   293 DNIKMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFVTYYTRKAALRAQDALH 357

  Fly   301 -VKGLQG--KGVQAQMAKQQEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSK 362
             :|.|.|  ..:|.:.|..:.::...|::..|...:.|.|:..:.:.:|.:....:||||...||
  Fly   358 NIKTLDGMHHPIQMKPADSENRNERKLFVGMLNKKYTEADVRQLFTGHGTIEECTVLRDQAGQSK 422

  Fly   363 GVGFARMESREKCEQIIQ-MFNGNTIPGAKDPLLVKFADGGPKKKNLFK---------------- 410
            |..|....:::.....|: :....|:.|...||:||||| ..|:|:..|
  Fly   423 GCAFVTFATKQNAIGAIKALHQSQTMEGCSAPLVVKFAD-TQKEKDQKKMQQIHAFCGINTPSGA 486

  Fly   411 -----TPDPNA---------RAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPIGVPYSRFSA---- 457
                 ||..||         .|.|...:....:|..|.:||.|.:....|.: ||.:..:|
  Fly   487 TAGAATPTINAATALIAAPPSAGRTNPSMAAALAAVPQVQQAGSAATAPTTL-VPLNSTTALSAS 550

  Fly   458 -----------------------------------PQVGGYPVAGSQWIPGYMMTQVDDQTSYSP 487
                                               .|:.||.::.:.::||.......:.:::..
  Fly   551 LTPNLLATNAAHQGAAAAAAYLGADPAAAAHLQLYQQLHGYGLSPAHYLPGLNFHHPPENSAHHS 615

  Fly   488 QYMQMAAAPPLGVTSYKPEAVNQVQPRGISMMVSGDTGVPYGTMMPQLATLQIGNSYISPTYPYY 552
            |:     :|.:|..|            ..|:..:..|.          |:..:|.
  Fly   616 QH-----SPGIGGAS------------AASLSAAAATA----------ASNPLGG---------- 643

  Fly   553 APPPTIIPTMPMTDSEQASTAASP 576
            |||||..||.....:..|...|:|
  Fly   644 APPPTPTPTSSAGHAAGAGLLAAP 667

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
shep	NP_001246636.1	RRM1_MSSP	243..313	CDD:240689	16/77 (21%)
		RRM2_MSSP	322..400	CDD:240690	21/78 (27%)
bru2	NP_001036356.1	RRM1_CELF1_2_Bruno	294..375	CDD:241075	16/80 (20%)
		RRM2_Bruno_like	381..461	CDD:241080	21/79 (27%)
		RRM_SF	801..892	CDD:302621

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR24012
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	2.010