Protein Alignment shep and Pabpc1

DIOPT Version :9

• Sequence 1: NP_001246636.1
• Gene: shep / 38605
• FlyBaseID: FBgn0052423
• Length: 590
• Species: Drosophila melanogaster
• Sequence 2: NP_032800.2
• Gene: Pabpc1 / 18458
• MGIID: 1349722
• Length: 636
• Species: Mus musculus
• Alignment Length: 438
• Identity: 92/438 - (21%)
• Similarity: 158/438 - (36%)
• Gaps: 116/438 - (26%)

  Fly   244 NLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQG-- 306
            |::|:.|.:...:|.|.:..:.:|.|:|.|.:.|:  |..||||||.||....||.|::.:.|
Mouse   100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML 162

  Fly   307 --------------KGVQAQMAKQQEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQ 357
                          |..:|::..:.::. ||:||.|......:..|:.:..|:|..:|.:::.|:
Mouse   163 LNDRKVFVGRFKSRKEREAELGARAKEF-TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226

  Fly   358 QMNSKGVGFARMESREKCEQIIQMFNGNTIPG------------------------AKDPLLVKF 398
            ...|||.||...|..|..::.:...||..:.|                        .|...:.::
Mouse   227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRY 291

  Fly   399 ADGGPKKKNLFKTPDPNARAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPIGVPYSRFSAP----- 458
            .......|||....| :.|..::.|..|       |:....|.:..|...|..:..||:|
Mouse   292 QGVNLYVKNLDDGID-DERLRKEFSPFG-------TITSAKVMMEGGRSKGFGFVCFSSPEEATK 348

  Fly   459 ---QVGGYPVAGSQWIPGYMMTQVDDQTSYSPQYMQMAA---------------APPLG------ 499
               ::.|..||...........:.:.|...:.||||..|               |||.|
Mouse   349 AVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAI 413

  Fly   500 ------VTSYKPEAVNQVQPRGISMMVSGDTGVPYGTM---------MPQLATLQIGNSYISPTY 549
                  ...|.|..:.|::| .......|....|:..|         .|..:|::..:|.:
Mouse   414 PQTQNRAAYYPPSQIAQLRP-SPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQV---- 473

  Fly   550 PYYAPPPTIIPTMPMTDSE---------QASTAASPD-EAYTQYPHQA 587
                  |.::.|..:.::.         .|:.||:|. ....||.:.|
Mouse   474 ------PRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAA 515

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
shep	NP_001246636.1	RRM1_MSSP	243..313	CDD:240689	25/84 (30%)
		RRM2_MSSP	322..400	CDD:240690	21/101 (21%)
Pabpc1	NP_032800.2	PABP-1234	11..615	CDD:130689	92/438 (21%)
		CSDE1-binding. /evidence=ECO:0000250	166..289		23/123 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910