Protein Alignment shep and PABPC5

DIOPT Version :9

• Sequence 1: NP_001246636.1
• Gene: shep / 38605
• FlyBaseID: FBgn0052423
• Length: 590
• Species: Drosophila melanogaster
• Sequence 2: NP_543022.1
• Gene: PABPC5 / 140886
• HGNCID: 13629
• Length: 382
• Species: Homo sapiens
• Alignment Length: 174
• Identity: 45/174 - (25%)
• Similarity: 85/174 - (48%)
• Gaps: 21/174 - (12%)

  Fly   235 QGGEQLSKT---NLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAF 296
            |..::|.|:   |::|:.|.:...::.|..:.:.:|.|:|.|.:.|  .|..|||.:|.|:..|.
Human    95 QPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAA 157

  Fly   297 AECAVKGLQG-------------KGVQAQMAKQQEQDP---TNLYIANLPPHFKETDLEAMLSKY 345
            |..|:..:.|             |..:.:.|:.:.:|.   ||:::.|:.....:..|:.:..:|
Human   158 ANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEY 222

  Fly   346 GQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTIPG 389
            |...|.:::||....|||.||.|.|:.|..::.:...:|.:|.|
Human   223 GPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDG 266

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
shep	NP_001246636.1	RRM1_MSSP	243..313	CDD:240689	20/85 (24%)
		RRM2_MSSP	322..400	CDD:240690	20/68 (29%)
PABPC5	NP_543022.1	PABP-1234	22..>379	CDD:130689	45/174 (26%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
User_Submission	0	0.000	Not matched by this tool.
	1	0.910