Protein Alignment shep and PABPC4L

DIOPT Version :9

• Sequence 1: NP_001246636.1
• Gene: shep / 38605
• FlyBaseID: FBgn0052423
• Length: 590
• Species: Drosophila melanogaster
• Sequence 2: NP_001108206.3
• Gene: PABPC4L / 132430
• HGNCID: 31955
• Length: 370
• Species: Homo sapiens
• Alignment Length: 261
• Identity: 62/261 - (23%)
• Similarity: 110/261 - (42%)
• Gaps: 61/261 - (23%)

  Fly   244 NLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKG 308
            |::|:.|.:...:|.|....:.:|.|:|:|.:.|...:  |||.||.|:..:.|:.|::.:.||.
Human    99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGS--KGYAFVHFQNQSAADRAIEEMNGKL 161

  Fly   309 V----------------QAQMAKQQEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQ 357
            :                :|:: :.:..:.||:||.|......:..|:.:.||||:.:|.:::.|.
Human   162 LKGCKVFVGRFKNRKDREAEL-RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS 225

  Fly   358 QMNSKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKK----------------- 405
            ...|||.||...:|.|..::.::..||..|.|.     :.|.....||
Human   226 SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQ-----LIFVGRAQKKVERQAELKQMFEQLKRE 285

  Fly   406 ------------KNLFKTPDPNARAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPIGVPYSRFSAP 458
                        |||..|.| :.:...:.|:.| .::....||:.|.|...|...      ||:|
Human   286 RIRGCQGVKLYIKNLDDTID-DEKLRNEFSSFG-SISRVKVMQEEGQSKGFGLIC------FSSP 342

  Fly   459 Q 459
            :
Human   343 E 343

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
shep	NP_001246636.1	RRM1_MSSP	243..313	CDD:240689	21/84 (25%)
		RRM2_MSSP	322..400	CDD:240690	24/77 (31%)
PABPC4L	NP_001108206.3	RRM	10..>369	CDD:330708	62/261 (24%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
User_Submission	0	0.000	Not matched by this tool.
	1	0.910