Protein Alignment shep and rbms1

DIOPT Version :10

• Sequence 1: NP_001246636.1
• Gene: shep / 38605
• FlyBaseID: FBgn0052423
• Length: 590
• Species: Drosophila melanogaster
• Sequence 2: XP_012825364.1
• Gene: rbms1 / 100036596
• XenbaseID: XB-GENE-1011124
• Length: 408
• Species: Xenopus tropicalis
• Alignment Length: 466
• Identity: 186/466 - (39%)
• Similarity: 233/466 - (50%)
• Gaps: 99/466 - (21%)

  Fly   153 YAAYTPHTATTPATTTVSFLSQPVDYYWYGQRVP----TAASPSNTNSSSSSNTGSQSGTLSTSL 213
            :|.:.|:..:..||.     .||:        ||    ...|||.|.|:::|::.|.|
 Frog     7 HAGFGPYYRSLNATR-----KQPI--------VPAHPMAPPSPSTTGSNNNSSSSSSS------- 51

  Fly   214 SNTTNTNTNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDK 278
                                 .|.:||||||||||||...|||:|||.:|..||.|:||||||||
 Frog    52 ---------------------SGWDQLSKTNLYIRGLSPNTTDQDLVKLCQPYGKIVSTKAILDK 95

  Fly   279 TTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKQQEQDPTNLYIANLPPHFKETDLEAMLS 343
            |||||||||||||:.||.|:.||..|:..|||||||||||||||||||:|||....|.:||:||.
 Frog    96 TTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELESMLK 160

  Fly   344 KYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNG---NTIPGAK---DPLLVKFADGG 402
            .:|||:|||||||....|:|||||||||.||||.:|..|||   .|:||..   :|||.||||||
 Frog   161 PFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVISHFNGKFIKTLPGVSAPAEPLLCKFADGG 225

  Fly   403 PKKKNLFKTPDPNARAW---RDVSAEGIPVAYDPTMQ--QNG-VSVNVGTPIGVPYSR------- 454
            .||:........|.|||   .:|...|:.:.||||..  ||| |.....||..:..:|
 Frog   226 QKKRQNQNKYVQNGRAWPREGEVRLAGMTLTYDPTTAAIQNGYVRRFYPTPYSIATNRMITQTSI 290

  Fly   455 --FSAPQVGGYPVAGSQWIPGYMMTQVDDQTSYSPQYMQMAAAPPLGVTSYKPEAVNQVQPRG-- 515
              :.|..|..|.|....|||.            .|..||.|.|    |.:...|....:||..
 Frog   291 TPYIASPVSTYQVQSPSWIPP------------QPYIMQHAGA----VLTPSMEHTMSLQPASMM 339

  Fly   516 --ISMMVSGDTGVPYGTMMPQLATLQIGNSYISPTYPYYAPPPTIIPTMPMTDSE---QASTAAS 575
              ::..:|..:....||.||  ||..:..:||    |.|    |.:.|..::..|   |...|..
 Frog   340 SPLTQQMSHLSLSSSGTYMP--ATTAMQGAYI----PQY----THVQTAAVSVEEPSGQQQVAVE 394

  Fly   576 PDEAYTQYPHQ 586
            ....::.|.:|
 Frog   395 TSSEHSPYTYQ 405

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
shep	NP_001246636.1	RRM_SF	240..321	CDD:473069	60/80 (75%)
		RRM2_MSSP	322..400	CDD:409690	49/83 (59%)
rbms1	XP_012825364.1	RRM1_MSSP1	53..138	CDD:409900	62/84 (74%)
		RRM2_MSSP1	139..223	CDD:409903	49/83 (59%)