DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4611 and AT1G80880

DIOPT Version :9

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_001319433.1 Gene:AT1G80880 / 844428 AraportID:AT1G80880 Length:540 Species:Arabidopsis thaliana


Alignment Length:435 Identity:98/435 - (22%)
Similarity:161/435 - (37%) Gaps:118/435 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 LSNSTRRSKKLKAVEYARQIKDHLKANRLNEAIAVLEQRMLKEDRAKP-DKYIYNLLISGCAKAG 198
            :|..||::..|....||       .||..::||...:  ::.:.:..| |:....||.:.| :.|
plant   184 VSKDTRKAMFLMMDRYA-------AANDTSQAIRTFD--IMDKFKHTPYDEAFQGLLCALC-RHG 238

  Fly   199 YTRKA--FFLYTKMRQRGLQVTGGTYTSLFNACANA-PSVSDGLAKAQILRENMLEKGYEPNVKN 260
            :..||  |.|.:| :...:.|.|      ||...|. .::...:.:|:.:...|......||..:
plant   239 HIEKAEEFMLASK-KLFPVDVEG------FNVILNGWCNIWTDVTEAKRIWREMGNYCITPNKDS 296

  Fly   261 YNAMIKAYGRCGDVDTAYMLADEMMERQLELNADTFNFLLQACASNSEHGFRHALLTWHNMLQRG 325
            |:.||..:.:.|::..:..|.|||.:|.|....:.:|.|:...  ..|..|..|:.....:.:.|
plant   297 YSHMISCFSKVGNLFDSLRLYDEMKKRGLAPGIEVYNSLVYVL--TREDCFDEAMKLMKKLNEEG 359

  Fly   326 ISPDYYSFNAMLRCARDCGFGDLDSMREVIDKIAPSAARKKPVLQLEKGQQDDLPSVEANTTTLP 390
            :.||..::|:|:|..  |..|.||..|.|:                                   
plant   360 LKPDSVTYNSMIRPL--CEAGKLDVARNVL----------------------------------- 387

  Fly   391 AQIEVATTASELELPNLLLPQPHLGSLVALEEVTRPHERFLLLGGLTGFLEHMKQHNITPDIETF 455
                 ||..||    ||   .|.:.:..|..|.....:...:||       .||..::.|..|||
plant   388 -----ATMISE----NL---SPTVDTFHAFLEAVNFEKTLEVLG-------QMKISDLGPTEETF 433

  Fly   456 TAMLEVI----PPTNAAEKQLLTFVRKIGLKADIDFFNILIKKRSMRFDYESAKEVLLMIRTAGL 516
            ..:|..:    .|.||           :.:.|::|.|.|:            |...|.:....||
plant   434 LLILGKLFKGKQPENA-----------LKIWAEMDRFEIV------------ANPALYLATIQGL 475

  Fly   517 RPDIVTYGVLALGCRTQEEARELLEQMHVAGIKMNMPILGAMLRQ 561
                       |.|...|:|||:..:|...|...| |:|..:|.:
plant   476 -----------LSCGWLEKAREIYSEMKSKGFVGN-PMLQKLLEE 508

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PPR_2 <157..196 CDD:289786 9/39 (23%)
PPR_2 182..231 CDD:289786 15/51 (29%)
PPR 185..215 CDD:279828 9/31 (29%)
PPR repeat 186..213 CDD:276811 9/28 (32%)
PPR repeat 219..252 CDD:276811 6/33 (18%)
PPR_1 252..284 CDD:289614 8/31 (26%)
PPR_2 256..304 CDD:289786 14/47 (30%)
PPR repeat 258..287 CDD:276811 8/28 (29%)
PPR repeat 293..324 CDD:276811 5/30 (17%)
PPR repeat 330..357 CDD:276811 9/26 (35%)
PPR repeat 485..514 CDD:276811 5/28 (18%)
PPR repeat 552..576 CDD:276811 3/10 (30%)
AT1G80880NP_001319433.1 PPR repeat 157..184 CDD:276811 98/435 (23%)
PPR repeat 190..218 CDD:276811 7/36 (19%)
PLN03218 <195..>468 CDD:215636 79/370 (21%)
PPR repeat 261..288 CDD:276811 5/26 (19%)
PPR repeat 296..323 CDD:276811 8/26 (31%)
PPR repeat 329..358 CDD:276811 5/30 (17%)
PPR repeat 364..393 CDD:276811 11/70 (16%)
PPR repeat 399..422 CDD:276811 4/29 (14%)
PPR repeat 432..459 CDD:276811 8/37 (22%)
PPR repeat 465..494 CDD:276811 10/39 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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