DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4611 and AT1G66345

DIOPT Version :9

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_849849.1 Gene:AT1G66345 / 842952 AraportID:AT1G66345 Length:544 Species:Arabidopsis thaliana


Alignment Length:347 Identity:66/347 - (19%)
Similarity:131/347 - (37%) Gaps:91/347 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   158 LKANRLNEAIAVLEQRMLKEDRAKPDKYIYNLLISGCAKAGYTRKAFFLYTKMRQRGLQVTGGTY 222
            |:..|:.|::::|::.::|  ....|...|::::...||.|....|..::.:|.|||.......|
plant   280 LEEMRIEESMSLLKRLLMK--NMVVDTIGYSIVVYAKAKEGDLVSARKVFDEMLQRGFSANSFVY 342

  Fly   223 TSLFNACANAPSVSDGLAKAQILRENMLEKGYEPNVKNYNAMIKAYGRCGDVDTAYMLADEMMER 287
            |.....|.....|.:    |:.|...|.|.|..|..:.:|.:|..:.|.|..:......:.|:.|
plant   343 TVFVRVCCEKGDVKE----AERLLSEMEESGVSPYDETFNCLIGGFARFGWEEKGLEYCEVMVTR 403

  Fly   288 QLELNADTFNFLLQACASNSEHGFRHALLTWHNMLQRGISPDYYSFNAMLRCARDCGF---GDLD 349
            .|..:...||.::::.:........:.:||  ..:.:|..||.::::.::|     ||   .|:|
plant   404 GLMPSCSAFNEMVKSVSKIENVNRANEILT--KSIDKGFVPDEHTYSHLIR-----GFIEGNDID 461

  Fly   350 SMREVI-----DKIAPSAARKKPVLQLEKGQQDDLPSVEANTTTLPAQIEVATTASELELPNLLL 409
            ...::.     .|::|.                               .||        ..:|::
plant   462 QALKLFYEMEYRKMSPG-------------------------------FEV--------FRSLIV 487

  Fly   410 PQPHLGSLVALEEVTRPHERFLLLGGLTGFLEHMKQHNITPDIETFTAMLEVIPPTNAAEKQLLT 474
            .....|.:.|.|:                :|:.||:..|.|:.:.:.|:::..            
plant   488 GLCTCGKVEAGEK----------------YLKIMKKRLIEPNADIYDALIKAF------------ 524

  Fly   475 FVRKIGLKADID-FFNILIKKR 495
              :|||.|.:.| .:|.:|..|
plant   525 --QKIGDKTNADRVYNEMISVR 544

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PPR_2 <157..196 CDD:289786 7/37 (19%)
PPR_2 182..231 CDD:289786 13/48 (27%)
PPR 185..215 CDD:279828 8/29 (28%)
PPR repeat 186..213 CDD:276811 6/26 (23%)
PPR repeat 219..252 CDD:276811 7/32 (22%)
PPR_1 252..284 CDD:289614 6/31 (19%)
PPR_2 256..304 CDD:289786 10/47 (21%)
PPR repeat 258..287 CDD:276811 5/28 (18%)
PPR repeat 293..324 CDD:276811 4/30 (13%)
PPR repeat 330..357 CDD:276811 5/34 (15%)
PPR repeat 485..514 CDD:276811 4/12 (33%)
PPR repeat 552..576 CDD:276811
AT1G66345NP_849849.1 PPR repeat 166..193 CDD:276811
PPR_2 198..246 CDD:404055
PPR repeat 199..228 CDD:276811
PPR repeat 236..263 CDD:276811
PLN03218 <307..>490 CDD:215636 43/232 (19%)
PPR repeat 307..333 CDD:276811 6/25 (24%)
PPR repeat 339..368 CDD:276811 7/32 (22%)
PPR repeat 374..403 CDD:276811 5/28 (18%)
PPR_long <438..544 CDD:407303 29/179 (16%)
PPR repeat 444..473 CDD:276811 5/33 (15%)
PPR repeat 479..508 CDD:276811 9/52 (17%)
PPR repeat 514..542 CDD:276811 7/41 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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