DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4611 and AT1G63400

DIOPT Version :10

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_176529.1 Gene:AT1G63400 / 842646 AraportID:AT1G63400 Length:577 Species:Arabidopsis thaliana


Alignment Length:409 Identity:91/409 - (22%)
Similarity:171/409 - (41%) Gaps:64/409 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   161 NRLNEAIAVLEQRMLKEDRAKPDKYIYNLLISGCAKAGYTRKAFFLYTKMRQRGLQVTGGTYTSL 225
            |:.:||:|::: ||::.. .:|:...|.::::|..|.|....||.|..||....::.....|:::
plant   204 NKASEAVALVD-RMVQRG-CQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTV 266

  Fly   226 FNACANAPSVSDGLAKAQILRENMLEKGYEPNVKNYNAMIKA---YGRCGDVDTAYMLADEMMER 287
            .::........|.|.    |...|..||..|||..|:::|..   |.|..|   |..|..:|:||
plant   267 IDSLCKYRHEDDALN----LFTEMENKGVRPNVITYSSLISCLCNYERWSD---ASRLLSDMIER 324

  Fly   288 QLELNADTFNFLLQACASNSEHGFRHALLTWHNMLQRGISPDYYSFNAMLR--CARDCGFGDLDS 350
            ::..|..|||.|:.|..  .|.....|...:..|::|.|.||.:::::::.  |..|    .||.
plant   325 KINPNVVTFNALIDAFV--KEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD----RLDE 383

  Fly   351 MREVIDKIAPSAARKKPVLQLEKGQQDDLPSVEANTTTLPAQIEVATTASELELPNLLLPQPHLG 415
            .:.:.:            |.:.|   |..|:|....|.:....:.......:||...:..:..:|
plant   384 AKHMFE------------LMISK---DCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVG 433

  Fly   416 SLVALEEVTRPHERFLLLGGLTGFLE------------HMKQHNITPDIETFTAMLEVIPPTNAA 468
            :.|....:            :.||.:            .|....:.|:|.|:..:|:.:......
plant   434 NTVTYTTL------------IHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKL 486

  Fly   469 EKQLLTF--VRKIGLKADIDFFNILIKKRSMRFDYESAKEVLLMIRTAGLRPDIVTYGVLALG-C 530
            ||.::.|  :::..::..|..:||:|:........|...::...:...|::||::.|..:..| |
plant   487 EKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFC 551

  Fly   531 R--TQEEARELLEQMHVAG 547
            |  .:|||..|..:|...|
plant   552 RKGLKEEADALFRKMREDG 570

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PLN03218 <166..>561 CDD:215636 89/404 (22%)
PPR repeat 186..213 CDD:276811 9/26 (35%)
PPR repeat 219..252 CDD:276811 5/32 (16%)
PPR repeat 258..287 CDD:276811 9/31 (29%)
PPR repeat 293..324 CDD:276811 8/30 (27%)
PPR repeat 330..357 CDD:276811 4/28 (14%)
PPR repeat 485..514 CDD:276811 5/28 (18%)
PPR repeat 552..576 CDD:276811
AT1G63400NP_176529.1 PPR_2 83..132 CDD:463778
PPR repeat 88..114 CDD:276811
PPR_2 119..167 CDD:463778
PPR repeat 122..149 CDD:276811
PPR repeat 157..184 CDD:276811
PLN03218 <170..>574 CDD:215636 91/409 (22%)
PPR repeat 190..219 CDD:276811 6/15 (40%)
PPR repeat 225..252 CDD:276811 8/26 (31%)
PPR repeat 262..289 CDD:276811 5/30 (17%)
PPR repeat 297..324 CDD:276811 8/29 (28%)
PPR repeat 332..359 CDD:276811 8/28 (29%)
PPR repeat 365..394 CDD:276811 5/44 (11%)
PPR repeat 400..429 CDD:276811 4/28 (14%)
PPR repeat 435..464 CDD:276811 4/40 (10%)
PPR repeat 470..499 CDD:276811 6/28 (21%)
PPR repeat 505..534 CDD:276811 5/28 (18%)
PPR repeat 540..569 CDD:276811 9/28 (32%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.