DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4611 and AT1G62680

DIOPT Version :10

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_176455.2 Gene:AT1G62680 / 842565 AraportID:AT1G62680 Length:548 Species:Arabidopsis thaliana


Alignment Length:434 Identity:98/434 - (22%)
Similarity:178/434 - (41%) Gaps:75/434 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 KANRLNEAIAVLEQRMLKEDRAKPDKYIYNLLISGCAKAGYTRKAFFLYTKMRQRGLQVTGGTYT 223
            :.||:::|::::::  :.|...|||...||.:|....|......||..:.::.::|::....|||
plant   167 RRNRVSDAVSLVDK--MVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYT 229

  Fly   224 SLFNACANAPSVSDGLAKAQILRENMLEKGYEPNVKNYNAMIKAYGRCGDVDTAYMLADEMMERQ 288
            :|.|...|:...||    |..|..:|::|...|||..|:|::.|:.:.|.|..|..|.:||:...
plant   230 ALVNGLCNSSRWSD----AARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS 290

  Fly   289 LELNADTFNFLLQACASNSEHGFRHALLTWHNMLQRGISPDYYSFNAMLRCARDCGFGDLDSMRE 353
            ::.:..|::.|:.....:..  ...|...:..|:.:|...|..|:|.::.     ||        
plant   291 IDPDIVTYSSLINGLCLHDR--IDEANQMFDLMVSKGCLADVVSYNTLIN-----GF-------- 340

  Fly   354 VIDKIAPSAARKKPVLQL--EKGQQDDLPSVEANTTTLPAQIEVATTASELELPNLLLPQPHLGS 416
                  ..|.|.:..::|  |..|:    .:.:||.|....|:....|.                
plant   341 ------CKAKRVEDGMKLFREMSQR----GLVSNTVTYNTLIQGFFQAG---------------- 379

  Fly   417 LVALEEVTRPHERFLLLGGLTGFLEHMKQHNITPDIETFTAMLEVIPPTNAAEKQLLTF--VRKI 479
                 :|.:..|          |...|....|:|||.|:..:|..:......||.|:.|  ::|.
plant   380 -----DVDKAQE----------FFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKR 429

  Fly   480 GLKADIDFFNILIKKRSMRFDYESAKEVLLMIRTAGLRPDIVTYGVLALGCRTQEEARELLEQMH 544
            .:..||..:..:|:........|.|..:...:...||:||||||..:..|..|    :.||.::.
plant   430 EMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCT----KGLLHEVE 490

  Fly   545 VAGIKMNMPILGAMLRQGC--ANKSFSYVNEIIQLSLEEGLKPN 586
            ....||...   .:::..|  ::...:...|:|:..|..|..|:
plant   491 ALYTKMKQE---GLMKNDCTLSDGDITLSAELIKKMLSCGYAPS 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PLN03218 <166..>561 CDD:215636 90/398 (23%)
PPR repeat 186..213 CDD:276811 6/26 (23%)
PPR repeat 219..252 CDD:276811 11/32 (34%)
PPR repeat 258..287 CDD:276811 10/28 (36%)
PPR repeat 293..324 CDD:276811 4/30 (13%)
PPR repeat 330..357 CDD:276811 4/26 (15%)
PPR repeat 485..514 CDD:276811 4/28 (14%)
PPR repeat 552..576 CDD:276811 2/25 (8%)
AT1G62680NP_176455.2 PLN03218 <61..>447 CDD:215636 76/341 (22%)
PPR repeat 87..114 CDD:276811
PPR repeat 122..149 CDD:276811
PPR repeat 157..184 CDD:276811 3/18 (17%)
PPR repeat 192..219 CDD:276811 6/26 (23%)
PPR repeat 227..254 CDD:276811 11/30 (37%)
PPR repeat 262..289 CDD:276811 9/26 (35%)
PPR repeat 295..324 CDD:276811 4/30 (13%)
PPR repeat 330..359 CDD:276811 8/47 (17%)
PPR repeat 365..391 CDD:276811 7/56 (13%)
PPR repeat 400..429 CDD:276811 7/28 (25%)
PPR_2 434..481 CDD:463778 14/46 (30%)
PPR repeat 435..464 CDD:276811 4/28 (14%)
PPR_2 468..>507 CDD:463778 12/45 (27%)
PPR repeat 470..499 CDD:276811 10/32 (31%)
Blue background indicates that the domain is not in the aligned region.

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