DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment CG4611 and PPR336

DIOPT Version :9

Sequence 1:	NP_647949.1	Gene:	CG4611 / 38601	FlyBaseID:	FBgn0035591	Length:	703	Species:	Drosophila melanogaster
Sequence 2:	NP_564786.1	Gene:	PPR336 / 842484	AraportID:	AT1G61870	Length:	408	Species:	Arabidopsis thaliana

Alignment Length:	282	Identity:	65/282 - (23%)
Similarity:	117/282 - (41%)	Gaps:	56/282 - (19%)

- Green bases have known domain annotations that are detailed below.

  Fly   355 IDKIAPSA-----ARKK---PVLQLEKGQQDDLPSVE-----ANTTTLPAQ-------------- 392
            ||:||.||     |.||   .|..|..|..::.|.::     |:...|.||
plant    78 IDRIAFSAAVENLAEKKHFSAVSNLLDGFIENRPDLKSERFAAHAIVLYAQANMLDHSLRVFRDL 142

  Fly   393 --IEVATTASELELPNLLLPQPHLGSLVA--LEEVTRPHERFLLLGGLTGFLEHMKQHNITPDIE 453
              .|::.|...|   |.||    ...|||  .:|..|.            ::|..|.:.|.||:|
plant   143 EKFEISRTVKSL---NALL----FACLVAKDYKEAKRV------------YIEMPKMYGIEPDLE 188

  Fly   454 TFTAMLEVIPPTNAAEK--QLLTFVRKIGLKADIDFFNILIKKRSMRFDYESAKEVLLMIRTAGL 516
            |:..|::|...:.:|..  .::..:.:.|:|.:...|.::|.........:...:||.|::..|:
plant   189 TYNRMIKVFCESGSASSSYSIVAEMERKGIKPNSSSFGLMISGFYAEDKSDEVGKVLAMMKDRGV 253

  Fly   517 RPDIVTYGV-LALGCRTQ--EEARELLEQMHVAGIKMNMPILGAMLRQGCANKSFSYVNEIIQLS 578
            ...:.||.: :...|:.:  :||:.||:.|..||:|.|......::...|....|....::.::.
plant   254 NIGVSTYNIRIQSLCKRKKSKEAKALLDGMLSAGMKPNTVTYSHLIHGFCNEDDFEEAKKLFKIM 318

  Fly   579 LEEGLKP-NEAFLRHLHNFHRG 599
            :..|.|| :|.:...::...:|
plant   319 VNRGCKPDSECYFTLIYYLCKG 340

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
CG4611	NP_647949.1	PPR_2	<157..196	CDD:289786
		PPR_2	182..231	CDD:289786
		PPR	185..215	CDD:279828
		PPR repeat	186..213	CDD:276811
		PPR repeat	219..252	CDD:276811
		PPR_1	252..284	CDD:289614
		PPR_2	256..304	CDD:289786
		PPR repeat	258..287	CDD:276811
		PPR repeat	293..324	CDD:276811
		PPR repeat	330..357	CDD:276811	1/1 (100%)
		PPR repeat	485..514	CDD:276811	5/28 (18%)
		PPR repeat	552..576	CDD:276811	2/23 (9%)
PPR336	NP_564786.1	PPR repeat	123..145	CDD:276811	3/21 (14%)
		PLN03218	<127..>349	CDD:215636	50/233 (21%)
		PPR repeat	153..180	CDD:276811	10/45 (22%)
		PPR repeat	187..216	CDD:276811	5/28 (18%)
		PPR repeat	224..251	CDD:276811	5/26 (19%)
		PPR repeat	259..286	CDD:276811	8/26 (31%)
		PPR_2	290..339	CDD:372443	7/48 (15%)
		PPR repeat	292..321	CDD:276811	2/28 (7%)
		PPR repeat	327..356	CDD:276811	2/14 (14%)
		PPR repeat	362..391	CDD:276811
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	0	0.000