DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4611 and AT1G16830

DIOPT Version :9

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_173127.4 Gene:AT1G16830 / 838254 AraportID:AT1G16830 Length:608 Species:Arabidopsis thaliana


Alignment Length:636 Identity:125/636 - (19%)
Similarity:220/636 - (34%) Gaps:179/636 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 PKEKSTKKVQDFGDPDTFGDAKVAATEDPGDVEEEEFLSNSTRRSKKLKAVEYARQIKDHLKANR 162
            |:|.:..|      |.|..:......|.|.|::...|.....:::...    :..:..||:    
plant    28 PREYTAAK------PLTHDNVYSCLRESPADLKTLNFFFWCAKQNNYF----HDDRAFDHM---- 78

  Fly   163 LNEAIAVLEQRMLKEDRAKPDKYIYNLLISGCA--------------KAGYTRKAFFLYTKMRQR 213
                :.|:|:  |..:....|:.|..|.||||.              :.....||..:||.|...
plant    79 ----VGVVEK--LTREYYSIDRIIERLKISGCEIKPRVFLLLLEIFWRGHIYDKAIEVYTGMSSF 137

  Fly   214 G-----------------LQVTGGTY---------------TSLFNACANAPSVSDGLAKAQILR 246
            |                 |.|..|..               .:|.:.|:...  ...|...:|:.
plant   138 GFVPNTRAMNMMMDVNFKLNVVNGALEIFEGIRFRNFFSFDIALSHFCSRGG--RGDLVGVKIVL 200

  Fly   247 ENMLEKGYEPNVKNYNAMIKAYGRCGDVDTAYMLADEMMERQLELNADTFNFLLQACASNSEHGF 311
            :.|:.:|:.||.:.:..:::...|.|.|..|:.:...|:...:.::.:.::.|:.....:.|.  
plant   201 KRMIGEGFYPNRERFGQILRLCCRTGCVSEAFQVVGLMICSGISVSVNVWSMLVSGFFRSGEP-- 263

  Fly   312 RHALLTWHNMLQRGISPDYYSFNAMLRCARDCGFGDLDSMRE---VIDKI-----APSAA----- 363
            :.|:..::.|:|.|.||:..::.::::     ||.||..:.|   |:.|:     ||...     
plant   264 QKAVDLFNKMIQIGCSPNLVTYTSLIK-----GFVDLGMVDEAFTVLSKVQSEGLAPDIVLCNLM 323

  Fly   364 ------------RKKPVLQLEKGQQDDLPSVEANTTTLPAQIEVATTASELELPNL--LLPQPHL 414
                        .:|....|||.:            .:|.|...|:..|.|.|...  |:|:...
plant   324 IHTYTRLGRFEEARKVFTSLEKRK------------LVPDQYTFASILSSLCLSGKFDLVPRITH 376

  Fly   415 GSLVALEEVTRPHERFLLLGGL-------TGF-------LEHMKQHNITPDIETFTAMLEVIPPT 465
            |.....:.||         |.|       .|:       |..|...:...|..|:|..|..:...
plant   377 GIGTDFDLVT---------GNLLSNCFSKIGYNSYALKVLSIMSYKDFALDCYTYTVYLSALCRG 432

  Fly   466 NAAEKQLLTFVRKIGLKADIDFFNILIK-KRSMRFDYESA-----------KEVLLMIRTAGLRP 518
            .|.             :|.|..:.|:|| |:.:...:.||           ...:.:.:...|..
plant   433 GAP-------------RAAIKMYKIIIKEKKHLDAHFHSAIIDSLIELGKYNTAVHLFKRCILEK 484

  Fly   519 ---DIVTYGVLALG---CRTQEEARELLEQMHVAGIKMNMPILGAMLRQGCANKSFSYVNEIIQL 577
               |:|:|.|...|   .:..|||..|...|...||..|......::...|..|....|.:|::.
plant   485 YPLDVVSYTVAIKGLVRAKRIEEAYSLCCDMKEGGIYPNRRTYRTIISGLCKEKETEKVRKILRE 549

  Fly   578 SLEEG--LKPNEAF-LRHLHNFHRGCARAIDARHPSTKTAAFKKGHSKFCD 625
            .::||  |.||..| :..|.:.:||        ..|...:.|:|..|:|.:
plant   550 CIQEGVELDPNTKFQVYSLLSRYRG--------DFSEFRSVFEKWKSEFTE 592

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PPR_2 <157..196 CDD:289786 11/52 (21%)
PPR_2 182..231 CDD:289786 18/94 (19%)
PPR 185..215 CDD:279828 12/60 (20%)
PPR repeat 186..213 CDD:276811 11/40 (28%)
PPR repeat 219..252 CDD:276811 6/47 (13%)
PPR_1 252..284 CDD:289614 7/31 (23%)
PPR_2 256..304 CDD:289786 8/47 (17%)
PPR repeat 258..287 CDD:276811 5/28 (18%)
PPR repeat 293..324 CDD:276811 4/30 (13%)
PPR repeat 330..357 CDD:276811 6/29 (21%)
PPR repeat 485..514 CDD:276811 7/40 (18%)
PPR repeat 552..576 CDD:276811 4/23 (17%)
AT1G16830NP_173127.4 PPR repeat 110..137 CDD:276811 5/26 (19%)
PLN03081 <130..>349 CDD:215563 41/239 (17%)
PPR repeat 215..241 CDD:276811 5/25 (20%)
PPR repeat 249..276 CDD:276811 4/28 (14%)
PLN03077 <250..>571 CDD:215561 75/361 (21%)
PPR repeat 282..311 CDD:276811 7/33 (21%)
PPR repeat 317..346 CDD:276811 3/28 (11%)
PPR repeat 421..448 CDD:276811 8/39 (21%)
PPR repeat 458..483 CDD:276811 2/24 (8%)
PPR repeat 489..518 CDD:276811 9/28 (32%)
PPR repeat 524..553 CDD:276811 4/28 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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