DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4611 and AT1G12300

DIOPT Version :9

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_172694.1 Gene:AT1G12300 / 837784 AraportID:AT1G12300 Length:637 Species:Arabidopsis thaliana


Alignment Length:463 Identity:111/463 - (23%)
Similarity:186/463 - (40%) Gaps:81/463 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   162 RLNEAIAVLEQRMLKEDRAKPDKYIYNLLISGCAKAGYTRKAFFLYTKMRQRGLQVTGGTYTSLF 226
            |::||:.::: ||: |...|||....|.|::|...:|...:|..|..||.:.|.|....||..:.
plant   173 RVSEALELVD-RMV-EMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVL 235

  Fly   227 NA-CANAPS------------------------VSDGLAK------AQILRENMLEKGYEPNVKN 260
            |. |.:..:                        :.|||.|      |..|...|..||...|:..
plant   236 NVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIIT 300

  Fly   261 YNAMIKAYGRCGDVDTAYMLADEMMERQLELNADTFNFLLQACASNSEHGFRHALLTWHNMLQRG 325
            ||.:|..:...|..|....|..:|::|::..|..||:.|:.:..  .|...|.|......|:.||
plant   301 YNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFV--KEGKLREAEELHKEMIHRG 363

  Fly   326 ISPDYYSFNAMLRCARD--CGFGDLDSMREVIDKIAPSAARKKPVLQLEKGQQDDLPSVEANTTT 388
            |:||..::.:::    |  |....||...:::|            |.:.||       .:.|..|
plant   364 IAPDTITYTSLI----DGFCKENHLDKANQMVD------------LMVSKG-------CDPNIRT 405

  Fly   389 LPAQIEVATTASELELPNLLLPQPHLGSLVALEEVTRPH--ERFLLLGGLT---GFLEHMKQHNI 448
            ....|.....|:.::....|..:..|..:|| :.||...  :.|..||.|.   ...:.|....:
plant   406 FNILINGYCKANRIDDGLELFRKMSLRGVVA-DTVTYNTLIQGFCELGKLNVAKELFQEMVSRKV 469

  Fly   449 TPDIETFTAMLEVIPPTNAAEKQLLTF--VRKIGLKADIDFFNILIKKRSMRFDYESAKEVLLMI 511
            .|:|.|:..:|:.:.....:||.|..|  :.|..::.||..:||:|.........:.|.::...:
plant   470 PPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSL 534

  Fly   512 RTAGLRPDIVTYGVLALG-CR--TQEEARELLEQMHVAGIKMNMP-------ILGAMLRQGCANK 566
            ...|::|.:.||.::..| |:  ...||..|..:|...|   :.|       ::.|.|..|.|.|
plant   535 PLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDG---HAPDGWTYNILIRAHLGDGDATK 596

  Fly   567 SFSYVNEI 574
            |...:.|:
plant   597 SVKLIEEL 604

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PPR_2 <157..196 CDD:289786 12/33 (36%)
PPR_2 182..231 CDD:289786 16/49 (33%)
PPR 185..215 CDD:279828 8/29 (28%)
PPR repeat 186..213 CDD:276811 8/26 (31%)
PPR repeat 219..252 CDD:276811 11/63 (17%)
PPR_1 252..284 CDD:289614 9/31 (29%)
PPR_2 256..304 CDD:289786 13/47 (28%)
PPR repeat 258..287 CDD:276811 7/28 (25%)
PPR repeat 293..324 CDD:276811 7/30 (23%)
PPR repeat 330..357 CDD:276811 4/28 (14%)
PPR repeat 485..514 CDD:276811 5/28 (18%)
PPR repeat 552..576 CDD:276811 8/30 (27%)
AT1G12300NP_172694.1 PPR_2 86..135 CDD:289786
PPR repeat 90..117 CDD:276811
PPR_2 122..169 CDD:289786
PPR repeat 125..152 CDD:276811
PPR_1 153..185 CDD:289614 4/12 (33%)
PPR_2 156..204 CDD:289786 12/32 (38%)
PPR repeat 160..187 CDD:276811 5/15 (33%)
PPR_1 187..220 CDD:289614 10/32 (31%)
PPR repeat 193..222 CDD:276811 8/28 (29%)
PPR_2 226..275 CDD:289786 7/48 (15%)
PPR_3 228..260 CDD:290526 4/31 (13%)
PPR repeat 228..257 CDD:276811 4/28 (14%)
PPR_1 257..290 CDD:289614 6/32 (19%)
PPR_2 262..310 CDD:289786 13/47 (28%)
PPR repeat 266..292 CDD:276811 7/25 (28%)
PPR_1 292..324 CDD:289614 9/31 (29%)
PPR repeat 300..327 CDD:276811 7/26 (27%)
PPR_1 327..359 CDD:289614 8/33 (24%)
PPR_2 331..380 CDD:289786 14/54 (26%)
PPR repeat 335..362 CDD:276811 7/28 (25%)
PPR_1 362..395 CDD:289614 11/48 (23%)
PPR_2 366..415 CDD:289786 13/71 (18%)
PPR repeat 370..397 CDD:276811 6/42 (14%)
PPR_1 397..430 CDD:289614 7/39 (18%)
PPR repeat 403..432 CDD:276811 4/28 (14%)
PPR_1 432..465 CDD:289614 8/33 (24%)
PPR_2 437..485 CDD:289786 11/47 (23%)
PPR repeat 438..467 CDD:276811 7/28 (25%)
PPR_1 467..500 CDD:289614 8/32 (25%)
PPR repeat 473..502 CDD:276811 7/28 (25%)
PPR_2 507..555 CDD:289786 11/47 (23%)
PPR repeat 508..534 CDD:276811 5/25 (20%)
PPR 510..543 CDD:273253 6/32 (19%)
PPR_1 537..570 CDD:289614 9/32 (28%)
PPR_2 541..588 CDD:289786 11/49 (22%)
PPR repeat 543..572 CDD:276811 8/28 (29%)
PPR repeat 578..606 CDD:276811 7/27 (26%)
PPR_2 580..625 CDD:289786 7/25 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 104 1.000 Inparanoid score I2129
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.960

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