DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4611 and AT1G09900

DIOPT Version :9

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_172461.1 Gene:AT1G09900 / 837522 AraportID:AT1G09900 Length:598 Species:Arabidopsis thaliana


Alignment Length:503 Identity:107/503 - (21%)
Similarity:188/503 - (37%) Gaps:106/503 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   127 GDVEEE-EFLSN------------------------STRRSKKL-----------KAVEYARQIK 155
            |::||. :||.|                        .||::.|:           ..:.|...|.
plant   116 GELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMIS 180

  Fly   156 DHLKANRLNEAIAVLEQRMLKEDRAKPDKYIYNLLISGCAKAGYTRKAFFLYTKMRQRGLQVTGG 220
            .:.||..:|.|::||::..:     .||...||.::.....:|..::|..:..:|.||.......
plant   181 GYCKAGEINNALSVLDRMSV-----SPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVI 240

  Fly   221 TYTSLFNA-CANAPSVSDGLAKAQILRENMLEKGYEPNVKNYNAMIKAYGRCGDVDTAYMLADEM 284
            |||.|..| |.::     |:..|..|.:.|.::|..|:|..||.::....:.|.:|.|....::|
plant   241 TYTILIEATCRDS-----GVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDM 300

  Fly   285 MERQLELNADTFNFLLQACASNSEHGFRHALLTWHNMLQRGISPDYYSFNAMLRCARDCGFGDLD 349
            .....:.|..|.|.:|::..|.........||.  :||::|.||...:||.::...  |..|.|.
plant   301 PSSGCQPNVITHNIILRSMCSTGRWMDAEKLLA--DMLRKGFSPSVVTFNILINFL--CRKGLLG 361

  Fly   350 SMREVIDKIAPSAARKKPVLQLEKGQQDDLPSVEANTTTLPAQIEVATTASELELPNLLLPQPHL 414
            ...::::|:.            :.|.|                            ||.|...|.|
plant   362 RAIDILEKMP------------QHGCQ----------------------------PNSLSYNPLL 386

  Fly   415 GSLVALEEVTRPHERFLLLGGLTGFLEHMKQHNITPDIETFTAMLEVIPPTNAAEK--QLLTFVR 477
            ......:::.|..|          :||.|......|||.|:..||..:......|.  ::|..:.
plant   387 HGFCKEKKMDRAIE----------YLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLS 441

  Fly   478 KIGLKADIDFFNILIKKRSMRFDYESAKEVLLMIRTAGLRPDIVTYGVLALGCRTQ---EEAREL 539
            ..|....:..:|.:|...:.......|.::|..:|...|:||.:||..|..|...:   :||.:.
plant   442 SKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKF 506

  Fly   540 LEQMHVAGIKMNMPILGAMLRQGCANKSFSYVNEIIQLSLEEGLKPNE 587
            ..:....||:.|.....:::...|.::......:.:...:..|.||||
plant   507 FHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNE 554

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PPR_2 <157..196 CDD:289786 10/38 (26%)
PPR_2 182..231 CDD:289786 15/49 (31%)
PPR 185..215 CDD:279828 7/29 (24%)
PPR repeat 186..213 CDD:276811 5/26 (19%)
PPR repeat 219..252 CDD:276811 10/33 (30%)
PPR_1 252..284 CDD:289614 8/31 (26%)
PPR_2 256..304 CDD:289786 12/47 (26%)
PPR repeat 258..287 CDD:276811 7/28 (25%)
PPR repeat 293..324 CDD:276811 8/30 (27%)
PPR repeat 330..357 CDD:276811 5/26 (19%)
PPR repeat 485..514 CDD:276811 5/28 (18%)
PPR repeat 552..576 CDD:276811 1/23 (4%)
AT1G09900NP_172461.1 PPR_2 102..149 CDD:404055 6/32 (19%)
PPR repeat 106..131 CDD:276811 6/14 (43%)
PPR_2 135..184 CDD:404055 5/48 (10%)
PPR repeat 140..166 CDD:276811 3/25 (12%)
PPR_2 170..216 CDD:404055 12/50 (24%)
PPR repeat 174..198 CDD:276811 8/23 (35%)
PPR repeat 206..233 CDD:276811 5/26 (19%)
PLN03218 <207..>580 CDD:215636 88/407 (22%)
PPR repeat 239..268 CDD:276811 10/33 (30%)
PPR repeat 274..303 CDD:276811 7/28 (25%)
PPR repeat 309..338 CDD:276811 8/30 (27%)
PPR repeat 346..373 CDD:276811 6/40 (15%)
PPR repeat 381..408 CDD:276811 7/36 (19%)
PPR repeat 414..443 CDD:276811 6/28 (21%)
PPR repeat 449..478 CDD:276811 5/28 (18%)
PPR repeat 484..513 CDD:276811 6/28 (21%)
PPR repeat 519..548 CDD:276811 1/28 (4%)
PPR repeat 554..583 CDD:276811 1/1 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 104 1.000 Inparanoid score I2129
OMA 1 1.010 - - QHG54853
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.970

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