DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4611 and AT1G08610

DIOPT Version :9

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_172337.1 Gene:AT1G08610 / 837383 AraportID:AT1G08610 Length:559 Species:Arabidopsis thaliana


Alignment Length:618 Identity:119/618 - (19%)
Similarity:212/618 - (34%) Gaps:180/618 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 KKVQDFGDPDTFGDAKVAATEDPGDVEEEEFLSNSTRRSKKLKAVE-YARQ------------IK 155
            |.::.||   ...|..:...::..:.|....|.::.:.:...|.|| .||.            ::
plant    86 KPMKQFG---LSSDGPITENDEETNNEILHNLCSNGKLTDACKLVEVMARHNQVPHFPSCSNLVR 147

  Fly   156 DHLKANRLNEAIAVLEQRMLKEDRAKPDKYIYNLLISGCAKAGYTRKAFFLYTKMRQRGLQVTGG 220
            ...:.::|::|:.:|  |::......||...||::|....|.|:.|.|.                
plant   148 GLARIDQLDKAMCIL--RVMVMSGGVPDTITYNMIIGNLCKKGHIRTAL---------------- 194

  Fly   221 TYTSLFNACANAPSVSDGLAKAQILRENMLEKGYEPNVKNYNAMIKAYGRCGDVDTAYMLADEMM 285
                                   :|.|:|...|..|:|..||.:|:.....|:.:.|.....:.:
plant   195 -----------------------VLLEDMSLSGSPPDVITYNTVIRCMFDYGNAEQAIRFWKDQL 236

  Fly   286 ERQLELNADTFNFLLQA----CASNSEHGFRHALLTWHNMLQRGISPDYYSFNAMLRCARDCGFG 346
            :........|:..|::.    |      |...|:....:|...|..||..::|:::.  .:|..|
plant   237 QNGCPPFMITYTVLVELVCRYC------GSARAIEVLEDMAVEGCYPDIVTYNSLVN--YNCRRG 293

  Fly   347 DLDSMREVIDKIAPSAARKKPVLQLEKGQQDDLPSVEANTTTLPAQI----------EVATTASE 401
            :|:.:..||..|            |..|       :|.||.|....:          ||.     
plant   294 NLEEVASVIQHI------------LSHG-------LELNTVTYNTLLHSLCSHEYWDEVE----- 334

  Fly   402 LELPNLLLPQPHLGSLVALEEVTRPHERFLLLGGLTGFLEHMKQHNITPDIETFTAMLEVIPPTN 466
             |:.|::....:..:::....:.....:..||.....|...|.:....|||.|:..:|..:....
plant   335 -EILNIMYQTSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLGAMSKEG 398

  Fly   467 AAEK--QLLTFVRKIGLKADIDFFNILIKKRSMRFDYESAKEVLLMIRTAGLRPDIVTYGVLALG 529
            ..:.  :||..::.......:..:|.:|...:.:...:.|.|:...:..||:.||.:|...|..|
plant   399 MVDDAIELLGLLKNTCCPPGLITYNSVIDGLAKKGLMKKALELYHQMLDAGIFPDDITRRSLIYG 463

  Fly   530 -CRTQ--EEARELLEQMHVAGIKMNMPILGAMLR---QG-CANKSFSYVNEIIQLSLEEGLKPNE 587
             ||..  |||.::|::....|    ..|.|:..|   || |..|......|::::.|..|.||:|
plant   464 FCRANLVEEAGQVLKETSNRG----NGIRGSTYRLVIQGLCKKKEIEMAIEVVEIMLTGGCKPDE 524

  Fly   588 AFLRHLHNFHRGCARAIDARHPSTKTAAFKKGHSKFCDKYRLYYEEQGLSGLKLEDAIAKVKERP 652
                                   |...|..||           .||.|:                
plant   525 -----------------------TIYTAIVKG-----------VEEMGM---------------- 539

  Fly   653 YDQFKLPPVNGMEPLKHEQLKHKTKQRKYIKKI 685
                      |.|.:   ||:.|.||.|.:|::
plant   540 ----------GSEAV---QLQKKLKQWKLLKEV 559

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PPR_2 <157..196 CDD:289786 9/38 (24%)
PPR_2 182..231 CDD:289786 9/48 (19%)
PPR 185..215 CDD:279828 7/29 (24%)
PPR repeat 186..213 CDD:276811 7/26 (27%)
PPR repeat 219..252 CDD:276811 3/32 (9%)
PPR_1 252..284 CDD:289614 8/31 (26%)
PPR_2 256..304 CDD:289786 9/51 (18%)
PPR repeat 258..287 CDD:276811 6/28 (21%)
PPR repeat 293..324 CDD:276811 6/34 (18%)
PPR repeat 330..357 CDD:276811 6/26 (23%)
PPR repeat 485..514 CDD:276811 4/28 (14%)
PPR repeat 552..576 CDD:276811 8/27 (30%)
AT1G08610NP_172337.1 PLN03218 <53..>531 CDD:215636 105/548 (19%)
PPR repeat 106..133 CDD:276811 6/26 (23%)
PPR repeat 141..168 CDD:276811 4/28 (14%)
PPR repeat 174..203 CDD:276811 10/67 (15%)
PPR repeat 209..234 CDD:276811 6/24 (25%)
PPR repeat 281..308 CDD:276811 8/40 (20%)
PPR repeat 316..343 CDD:276811 5/32 (16%)
PPR repeat 351..378 CDD:276811 4/26 (15%)
PPR repeat 384..413 CDD:276811 5/28 (18%)
PPR repeat 419..447 CDD:276811 4/27 (15%)
PPR repeat 454..479 CDD:276811 9/24 (38%)
PPR repeat 489..516 CDD:276811 7/26 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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