DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4611 and AT1G05670

DIOPT Version :10

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_172058.2 Gene:AT1G05670 / 837074 AraportID:AT1G05670 Length:741 Species:Arabidopsis thaliana


Alignment Length:460 Identity:100/460 - (21%)
Similarity:187/460 - (40%) Gaps:68/460 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 VEYARQIKDHLKANRLNEAIAVLEQRMLKEDRAKPDKYIYNLLISGCAKAGYTRKAFFLYTKMRQ 212
            :.|:..:..:.:...|::...::|  ::|....||:.|||..:|....:.....:|...:::|.:
plant   282 ISYSTVVNGYCRFGELDKVWKLIE--VMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIR 344

  Fly   213 RGLQVTGGTYTSLFNACANAPSVSDGLAKAQILRE------NMLEKGYEPNVKNYNAMIKAYGRC 271
            :|:......||:|.          ||..|...:|.      .|..:...|:|..|.|:|..:.:.
plant   345 QGILPDTVVYTTLI----------DGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQI 399

  Fly   272 GDVDTAYMLADEMMERQLELNADTFNFLLQA-C-ASNSEHGFRHALLTWHN-MLQRGISPDYYSF 333
            ||:..|..|..||..:.||.::.||..|:.. | |.:.:..||     .|| |:|.|.||:..::
plant   400 GDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFR-----VHNHMIQAGCSPNVVTY 459

  Fly   334 NAMLRCARD--CGFGDLDSMREVIDK-----IAPSAARKKPVLQ--LEKGQQDDLPSVEANTTTL 389
            ..::    |  |..|||||..|::.:     :.|:......::.  .:.|..::       ...|
plant   460 TTLI----DGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEE-------AVKL 513

  Fly   390 PAQIEVA-TTASELELPNLLLPQPHLGSLVALEEVTRPHERFLLLGGLTGFLEHMKQHNITPDIE 453
            ..:.|.| ..|..:....|:......|.:...:|:                |:.|....:.|.|.
plant   514 VGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEI----------------LKEMLGKGLQPTIV 562

  Fly   454 TFTAMLEVIPPTNAAE--KQLLTFVRKIGLKADIDFFNILIKKRSMRFDYESAKEVLLMIRTAGL 516
            ||..::.........|  ::||.::...|:..:...||.|:|:..:|.:.::|..:...:.:.|:
plant   563 TFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGV 627

  Fly   517 RPDIVTYGVLALG---CRTQEEARELLEQMHVAGIKMNMPILGAMLRQGCANKSFSYVNEIIQLS 578
            .||..||..|..|   .|..:||..|.::|...|..:::.....:::.....|.|....|:....
plant   628 GPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQM 692

  Fly   579 LEEGL 583
            ..|||
plant   693 RREGL 697

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PLN03218 <166..>561 CDD:215636 92/418 (22%)
PPR repeat 186..213 CDD:276811 5/26 (19%)
PPR repeat 219..252 CDD:276811 8/38 (21%)
PPR repeat 258..287 CDD:276811 10/28 (36%)
PPR repeat 293..324 CDD:276811 10/33 (30%)
PPR repeat 330..357 CDD:276811 8/28 (29%)
PPR repeat 485..514 CDD:276811 6/28 (21%)
PPR repeat 552..576 CDD:276811 3/23 (13%)
AT1G05670NP_172058.2 PLN03218 <173..>617 CDD:215636 81/378 (21%)
PPR repeat 212..240 CDD:276811
PPR repeat 248..275 CDD:276811
PPR repeat 283..310 CDD:276811 4/28 (14%)
PPR repeat 316..345 CDD:276811 6/28 (21%)
PPR repeat 353..380 CDD:276811 8/36 (22%)
PPR repeat 388..415 CDD:276811 9/26 (35%)
PPR repeat 421..450 CDD:276811 10/33 (30%)
PPR repeat 458..485 CDD:276811 8/30 (27%)
PPR repeat 491..520 CDD:276811 3/35 (9%)
PPR repeat 526..555 CDD:276811 5/44 (11%)
PPR repeat 561..590 CDD:276811 6/28 (21%)
PPR repeat 596..625 CDD:276811 6/28 (21%)
PPR_2 629..678 CDD:463778 12/48 (25%)
PPR repeat 631..660 CDD:276811 9/28 (32%)
PPR repeat 666..695 CDD:276811 3/28 (11%)
PPR 668..700 CDD:273253 6/30 (20%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.