DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4611 and AT5G65560

DIOPT Version :10

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_201359.1 Gene:AT5G65560 / 836682 AraportID:AT5G65560 Length:915 Species:Arabidopsis thaliana


Alignment Length:590 Identity:138/590 - (23%)
Similarity:229/590 - (38%) Gaps:137/590 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   116 GDAKVAATEDPGDV---EEEEFLSNSTRRSKKLKAVEYARQIKDHLKANRLNEAIAVLEQRMLKE 177
            |..|....||..||   .|...||.:||        .|...||.:.|:| :::|:.||.:.:  |
plant   402 GYCKRGMIEDAVDVVELMESRKLSPNTR--------TYNELIKGYCKSN-VHKAMGVLNKML--E 455

  Fly   178 DRAKPDKYIYNLLISGCAKAGYTRKAFFLYTKMRQRGLQVTGGTYTSLFNACANAPSVSDGLAKA 242
            .:..||...||.||.|..::|....|:.|.:.|..|||.....||||:.::...:..|.:    |
plant   456 RKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEE----A 516

  Fly   243 QILRENMLEKGYEPNVKNYNAMIKAYGRCGDVDTAYMLADEMMERQLELNADTFNFLLQA-CASN 306
            ..|.:::.:||..|||..|.|:|..|.:.|.||.|:::.::|:.:....|:.|||.|:.. ||..
plant   517 CDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADG 581

  Fly   307 SEHGFRHALLTWHNMLQRGISPDYYSFNAML-RCARDCGFGDLDSMREVIDKIAPSAARKKPVLQ 370
            .   .:.|.|....|::.|:.|...:...:: |..:|   ||.|.......::..|..:      
plant   582 K---LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKD---GDFDHAYSRFQQMLSSGTK------ 634

  Fly   371 LEKGQQDDLPSVEANTTTLPAQIEVATTASELELPNLLLPQPHLGSLVALEEVTRPHERFLLLGG 435
                     |.....||.      :.|...|             |.|:..|::            
plant   635 ---------PDAHTYTTF------IQTYCRE-------------GRLLDAEDM------------ 659

  Fly   436 LTGFLEHMKQHNITPDIETFTAMLE---VIPPTNAAEKQLLTFVRKIGLKADIDFFNILIKK-RS 496
                :..|:::.::||:.|::::::   .:..||.| ..:|..:|..|.:.....|..|||. ..
plant   660 ----MAKMRENGVSPDLFTYSSLIKGYGDLGQTNFA-FDVLKRMRDTGCEPSQHTFLSLIKHLLE 719

  Fly   497 MRFDYESAKEVLLMIRTAGLRPDIVTYGVLALGCRTQEEARELLEQMHVAGIKMNMP-----ILG 556
            |::..:...|..|...:..:..|.|.               ||||:|....:..|..     |||
plant   720 MKYGKQKGSEPELCAMSNMMEFDTVV---------------ELLEKMVEHSVTPNAKSYEKLILG 769

  Fly   557 ----AMLRQGCANKSFSYVNEIIQLSLEEGLKPNEAFLRHLHNF------HRGCARAID-----A 606
                ..||  .|.|.|.::..      .||:.|:|.....|.:.      |...|:.:|     .
plant   770 ICEVGNLR--VAEKVFDHMQR------NEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVG 826

  Fly   607 RHPSTKT------AAFKKGH-----SKFCDKYRLYYEEQGLSGLKLEDAIAK--VKERPYDQFKL 658
            ..|..::      ..:|||.     |.|.:..:..|.|..|:...:.|.:.|  :.|..|:.|.:
plant   827 HLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNV 891

  Fly   659 PPVNG 663
            ...||
plant   892 MEKNG 896

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PLN03218 <166..>561 CDD:215636 94/409 (23%)
PPR repeat 186..213 CDD:276811 9/26 (35%)
PPR repeat 219..252 CDD:276811 7/32 (22%)
PPR repeat 258..287 CDD:276811 10/28 (36%)
PPR repeat 293..324 CDD:276811 9/31 (29%)
PPR repeat 330..357 CDD:276811 5/27 (19%)
PPR repeat 485..514 CDD:276811 7/29 (24%)
PPR repeat 552..576 CDD:276811 8/32 (25%)
AT5G65560NP_201359.1 PPR repeat 125..148 CDD:276811
PPR repeat 149..172 CDD:276811
PPR repeat 185..212 CDD:276811
PLN03218 <186..>413 CDD:215636 4/10 (40%)
PPR repeat 220..247 CDD:276811
PPR repeat 253..282 CDD:276811
PPR repeat 288..317 CDD:276811
PLN03218 <321..>679 CDD:215636 85/347 (24%)
PPR repeat 325..352 CDD:276811
PPR repeat 358..387 CDD:276811
PPR repeat 393..422 CDD:276811 7/19 (37%)
PPR repeat 428..456 CDD:276811 10/38 (26%)
PPR repeat 464..491 CDD:276811 9/26 (35%)
PPR repeat 497..526 CDD:276811 7/32 (22%)
PPR repeat 532..561 CDD:276811 10/28 (36%)
PPR repeat 567..595 CDD:276811 9/30 (30%)
PLN03077 571..>898 CDD:215561 80/406 (20%)
PPR repeat 602..631 CDD:276811 5/31 (16%)
PPR repeat 637..666 CDD:276811 8/63 (13%)
PPR repeat 672..700 CDD:276811 5/28 (18%)
PPR repeat 707..753 CDD:276811 14/60 (23%)
PPR repeat 760..789 CDD:276811 8/36 (22%)
PPR repeat 796..825 CDD:276811 5/28 (18%)
PPR repeat 831..859 CDD:276811 5/27 (19%)
PPR repeat 866..895 CDD:276811 6/28 (21%)
Blue background indicates that the domain is not in the aligned region.

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