DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG4611 and AT5G64320

DIOPT Version :9

Sequence 1:	NP_647949.1	Gene:	CG4611 / 38601	FlyBaseID:	FBgn0035591	Length:	703	Species:	Drosophila melanogaster
Sequence 2:	NP_201237.1	Gene:	AT5G64320 / 836553	AraportID:	AT5G64320	Length:	730	Species:	Arabidopsis thaliana

Alignment Length:	528	Identity:	124/528 - (23%)
Similarity:	195/528 - (36%)	Gaps:	140/528 - (26%)

- Green bases have known domain annotations that are detailed below.

  Fly   135 LSNSTRRSKKLKAVEYARQIKDHLKANRLNEAIAVLEQRML------------------KEDR-- 179
            |.:.|:......:|.|...|....|.||:|||:.:||:..|                  |.||
plant   240 LRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRIN 304

  Fly   180 --AK-----------PDKYIYNLLISGCAKAGYTRKAFFLYTKMRQRGLQ---------VTGG-- 220
              ||           ||...|..|::|..|.|....|..|:.::.:..:.         ||.|
plant   305 EAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRL 369

  Fly   221 ---------------------TYTSLFNACANAPSVSDGLAKAQILRENMLEKGYEPNVKNYNAM 264
                                 ||.||.........|  ||| .::|.: |..||.:|||.:|..:
plant   370 DDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLV--GLA-LEVLHD-MRNKGCKPNVYSYTIL 430

  Fly   265 IKAYGRCGDVDTAYMLADEMMERQLELNADTFNFLLQA-CASNSEHGFRHALLTWHNMLQRGISP 328
            :..:.:.|.:|.||.:.:||....|:.|...||.|:.| |   .||....|:..:..|.::|..|
plant   431 VDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFC---KEHRIPEAVEIFREMPRKGCKP 492

  Fly   329 DYYSFNAMLRCARDCGFGDLDSMREVI----DKIAPSAARKKPVLQLEKGQQDDLPSVEANTTTL 389
            |.|:||:::     .|..::|.::..:    |.|:                    ..|.|||.|.
plant   493 DVYTFNSLI-----SGLCEVDEIKHALWLLRDMIS--------------------EGVVANTVTY 532

  Fly   390 PAQIEVATTASEL-ELPNLLLPQPHLGSLVALEEVTRPHERFLLLGGLTGFLEHMKQHNITPDIE 453
            ...|.......|: |...|:......||  .|:|:|...    |:.||....|..|..::
plant   533 NTLINAFLRRGEIKEARKLVNEMVFQGS--PLDEITYNS----LIKGLCRAGEVDKARSL----- 586

  Fly   454 TFTAML-EVIPPTNAAEKQLLTFVRKIGLKADIDFFNILIKKRSMRFDYESAKEVLLMIRTAGLR 517
             |..|| :...|:|.:...|:..:.:.|:..:.               .|..||::|    .|..
plant   587 -FEKMLRDGHAPSNISCNILINGLCRSGMVEEA---------------VEFQKEMVL----RGST 631

  Fly   518 PDIVTYGVLALG-CRTQ--EEARELLEQMHVAGIKMNMPILGAMLRQGCANKSFSY-VNEIIQLS 578
            |||||:..|..| ||..  |:...:..::...||..:......::...|.. .|.| ...::...
plant   632 PDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKG-GFVYDACLLLDEG 695

  Fly   579 LEEGLKPN 586
            :|:|..||
plant   696 IEDGFVPN 703

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
CG4611	NP_647949.1	PPR_2	<157..196	CDD:289786	19/71 (27%)
		PPR_2	182..231	CDD:289786	16/80 (20%)
		PPR	185..215	CDD:279828	7/29 (24%)
		PPR repeat	186..213	CDD:276811	7/26 (27%)
		PPR repeat	219..252	CDD:276811	11/55 (20%)
		PPR_1	252..284	CDD:289614	10/31 (32%)
		PPR_2	256..304	CDD:289786	16/48 (33%)
		PPR repeat	258..287	CDD:276811	8/28 (29%)
		PPR repeat	293..324	CDD:276811	9/31 (29%)
		PPR repeat	330..357	CDD:276811	5/30 (17%)
		PPR repeat	485..514	CDD:276811	4/28 (14%)
		PPR repeat	552..576	CDD:276811	3/24 (13%)
AT5G64320	NP_201237.1	PPR_2	184..228	CDD:289786
		PPR repeat	184..211	CDD:276811
		PPR_2	215..264	CDD:289786	5/23 (22%)
		PPR	218..252	CDD:273253	2/11 (18%)
		PPR repeat	219..246	CDD:276811	2/5 (40%)
		PPR_1	246..278	CDD:289614	11/31 (35%)
		PPR_2	250..299	CDD:289786	12/48 (25%)
		PPR repeat	254..281	CDD:276811	10/26 (38%)
		PPR_1	281..313	CDD:289614	5/31 (16%)
		PPR_2	285..334	CDD:289786	10/48 (21%)
		PPR repeat	287..316	CDD:276811	5/28 (18%)
		PPR_1	316..345	CDD:289614	8/28 (29%)
		PPR_1	350..380	CDD:289614	3/29 (10%)
		PPR repeat	355..383	CDD:276811	3/27 (11%)
		PPR_2	387..436	CDD:289786	16/52 (31%)
		PPR	390..424	CDD:273253	13/37 (35%)
		PPR repeat	391..418	CDD:276811	10/30 (33%)
		PPR_1	418..451	CDD:289614	11/32 (34%)
		PPR repeat	424..453	CDD:276811	8/28 (29%)
		PPR_1	453..486	CDD:289614	10/35 (29%)
		PPR_2	457..505	CDD:289786	17/55 (31%)
		PPR repeat	459..488	CDD:276811	9/31 (29%)
		PPR_1	488..520	CDD:289614	8/36 (22%)
		PPR repeat	494..523	CDD:276811	7/53 (13%)
		PPR_1	523..556	CDD:289614	9/32 (28%)
		PPR_2	528..576	CDD:289786	15/53 (28%)
		PPR repeat	531..558	CDD:276811	5/26 (19%)
		PPR_1	558..590	CDD:289614	11/43 (26%)
		PPR_2	563..611	CDD:289786	13/57 (23%)
		PPR repeat	564..593	CDD:276811	10/38 (26%)
		PPR_1	593..626	CDD:289614	7/47 (15%)
		PPR repeat	599..628	CDD:276811	7/47 (15%)
		PPR_1	628..659	CDD:289614	11/30 (37%)
		PPR_2	632..681	CDD:289786	12/48 (25%)
		PPR repeat	634..661	CDD:276811	8/26 (31%)
		PPR_1	663..694	CDD:289614	5/31 (16%)
		PPR_2	667..713	CDD:289786	7/38 (18%)
		PPR repeat	669..694	CDD:276811	3/25 (12%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	104	1.000	Inparanoid score	I2129
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.050