DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4611 and AT5G55840

DIOPT Version :10

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_200395.2 Gene:AT5G55840 / 835678 AraportID:AT5G55840 Length:1136 Species:Arabidopsis thaliana


Alignment Length:602 Identity:136/602 - (22%)
Similarity:225/602 - (37%) Gaps:154/602 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   119 KVAATED-----------PGDVEEEEFLSNSTRRSKKLKAVE----------------YARQIKD 156
            |||..|:           |..|..:..::......:.|||..                |...:|.
plant   563 KVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKG 627

  Fly   157 HLKANRLNEAIAVLEQRMLKEDRAKP---DKYIYNLLISGCAKAGYTRKAFFLYTKMRQRGLQVT 218
            ..|...|.||     ::.||...|.|   |..:||.|::...|:|...||..|:.:|.||.:...
plant   628 LCKGGHLREA-----EKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPD 687

  Fly   219 GGTYTSLFNA-CANAPSV-------------------------SDGLAKAQ------ILRENMLE 251
            ..|||||.:. |....:|                         .||:.||.      ..||.|..
plant   688 SYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDN 752

  Fly   252 KGYEPNVKNYNAMIKAYGRCGDVDTAYMLADEMMERQLELNADTFNFLLQACASNSE-------- 308
            .|:.|::...||||..|.|.|.::....|..||..:....|..|:|.||...:...:        
plant   753 LGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLY 817

  Fly   309 -----HGFRHALLTWH---------NMLQ-----------RGISPDYYSFNAML-RCARDCGFGD 347
                 :|.....||.|         |||:           ||:..|.|:||.:: :|   |..|:
plant   818 RSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKC---CANGE 879

  Fly   348 LDSMREVIDKIAPSAARKKPVLQLEKGQQDDLPSVEANTTTLPAQIEVATTASELELPNLLLPQP 412
            ::...::: |:..|..     :.|:|             .|..|.:.|.......:...::|.: 
plant   880 INWAFDLV-KVMTSLG-----ISLDK-------------DTCDAMVSVLNRNHRFQESRMVLHE- 924

  Fly   413 HLGSLVALEEVTRPHERFL-LLGGL-------TGFL--EHMKQHNITPDIETFTAMLEVIPPTNA 467
                 ::.:.::....::: |:.||       |.|:  |.|..|.|.|.....:||:..:.....
plant   925 -----MSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGK 984

  Fly   468 AEKQ--LLTFVRKIGLKADIDFFNILIKKRSMRFDYESAKEVLLMIRTAGLRPDIVTYGVLALGC 530
            |::.  ||.|:.|:.|...|..|..|:.......:...|.|:.:::...||:.|:|:|.||..|.
plant   985 ADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGL 1049

  Fly   531 RTQEE---ARELLEQMHVAGIKMNMPILGAMLRQGCANK-SFSYVNEIIQLSLEEGLKPNEAFLR 591
            ..:.:   |.||.|:|...|...|.....|::|...|.: :||..:.|::..|..|      |:.
plant  1050 CAKGDMALAFELYEEMKGDGFLANATTYKALIRGLLARETAFSGADIILKDLLARG------FIT 1108

  Fly   592 HL---HNFHRGCARAID 605
            .:   .:.||....|::
plant  1109 SMSLSQDSHRNLKMAME 1125

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PLN03218 <166..>561 CDD:215636 111/478 (23%)
PPR repeat 186..213 CDD:276811 9/26 (35%)
PPR repeat 219..252 CDD:276811 14/64 (22%)
PPR repeat 258..287 CDD:276811 10/28 (36%)
PPR repeat 293..324 CDD:276811 11/63 (17%)
PPR repeat 330..357 CDD:276811 6/27 (22%)
PPR repeat 485..514 CDD:276811 5/28 (18%)
PPR repeat 552..576 CDD:276811 6/24 (25%)
AT5G55840NP_200395.2 PPR repeat 165..192 CDD:276811
PLN03218 <170..>630 CDD:215636 11/66 (17%)
PPR repeat 200..227 CDD:276811
PPR repeat 235..262 CDD:276811
PPR repeat 268..297 CDD:276811
PPR repeat 305..332 CDD:276811
PPR repeat 338..367 CDD:276811
PPR repeat 373..402 CDD:276811
PPR repeat 408..437 CDD:276811
PPR repeat 443..472 CDD:276811
PLN03218 <453..>886 CDD:215636 78/330 (24%)
PPR repeat 478..503 CDD:276811
PPR repeat 513..540 CDD:276811
PPR repeat 548..577 CDD:276811 4/13 (31%)
PPR repeat 583..609 CDD:276811 4/25 (16%)
PPR repeat 618..644 CDD:276811 8/30 (27%)
PPR repeat 653..682 CDD:276811 9/28 (32%)
PPR repeat 688..717 CDD:276811 7/28 (25%)
PPR repeat 724..750 CDD:276811 6/25 (24%)
PPR repeat 759..788 CDD:276811 10/28 (36%)
PPR repeat 794..821 CDD:276811 4/26 (15%)
PPR repeat 829..853 CDD:276811 6/23 (26%)
PPR repeat 866..893 CDD:276811 6/30 (20%)
PPR repeat 899..928 CDD:276811 5/47 (11%)
PLN03218 <917..>1083 CDD:215636 40/171 (23%)
PPR repeat 934..961 CDD:276811 6/26 (23%)
PPR repeat 973..998 CDD:276811 6/24 (25%)
PPR repeat 1004..1033 CDD:276811 5/28 (18%)
PPR repeat 1039..1066 CDD:276811 9/26 (35%)
Blue background indicates that the domain is not in the aligned region.

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