DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4611 and EMB1006

DIOPT Version :9

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_199839.1 Gene:EMB1006 / 835093 AraportID:AT5G50280 Length:723 Species:Arabidopsis thaliana


Alignment Length:732 Identity:147/732 - (20%)
Similarity:250/732 - (34%) Gaps:255/732 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 FREEVFEELITAAPKEHQKFKPEKKPKEKSTKKVQDFGDPDTFGDAKVAATEDPGDVEEEEFLSN 137
            |:........||.|....||..:|. :..|.....||.||:|..::|         .||..|::|
plant   104 FKSRTLTSESTADPARESKFSLQKN-RRTSWHLAPDFADPETEIESK---------PEESVFVTN 158

  Fly   138 STRRSKKL--------KAVEYARQIKDHLKANRLNEAIAVLEQRM-------------------- 174
            .......:        :.:|.|:.:|::   ..|.|.::..|:|:                    
plant   159 QQTLGVHIPFESGVAREILELAKNLKEN---QTLGEMLSGFERRVSDTECVEALVMMGESGFVKS 220

  Fly   175 --------------LKEDRA-----------------------KPDK------YIYNLLISG--- 193
                          |...||                       .|||      .:||..|||   
plant   221 CLYFYEWMSLQEPSLASPRACSVLFTLLGRERMADYILLLLSNLPDKEEFRDVRLYNAAISGLSA 285

  Fly   194 -------------------------CA-------KAGYTRKAFF-LYTKMRQRGLQ----VTGGT 221
                                     ||       |||.:.|..: ::.||.::|::    |.||.
plant   286 SQRYDDAWEVYEAMDKINVYPDNVTCAILITTLRKAGRSAKEVWEIFEKMSEKGVKWSQDVFGGL 350

  Fly   222 YTSLFNACANAPSVSDGL-AKAQILRENMLEKGYEPNVKNYNAMIKAYGRCGDVDTAYMLADEMM 285
            ..|.   |      .:|| .:|.:::..|.:||...|...||.::.||.:...::....|..||.
plant   351 VKSF---C------DEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMR 406

  Fly   286 ERQLELNADTFNFLLQACASNSEHGFRHALLTWHNMLQRGISPDYYSFNAMLRCARDCGFGDLDS 350
            ::.|:.:|.|:|.|:.|.|...:......||  ..|...|:.|:..|:..::     ..:|   .
plant   407 DKGLKPSAATYNILMDAYARRMQPDIVETLL--REMEDLGLEPNVKSYTCLI-----SAYG---R 461

  Fly   351 MREVIDKIAPSAARKKPVLQLEKGQQDDLPSVEANTTTLPAQIEVATTASELELPNLLLPQPH-L 414
            .:::.|..|.:..|.|.|     |                                 |.|..| .
plant   462 TKKMSDMAADAFLRMKKV-----G---------------------------------LKPSSHSY 488

  Fly   415 GSLVALEEVTRPHERFLLLGGLTGFLEHMKQHNITPDIETFTAMLEVIPPTNAAEKQLLTFVRKI 479
            .:|:....|:..||:     ....| |.|.:..|.|.:||:|::|:....:....|  |..:.|:
plant   489 TALIHAYSVSGWHEK-----AYASF-EEMCKEGIKPSVETYTSVLDAFRRSGDTGK--LMEIWKL 545

  Fly   480 GLKADID----FFNILIKKRSMRFDYESAKEVLLMIRTAGLRPDIVTYGVLALG-CRTQEEAR-- 537
            .|:..|.    .:|.|:...:.:..|..|::|:......||:|.::||.:|... .|..::|:  
plant   546 MLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLP 610

  Fly   538 ELLEQMHVAGIKMN----MPILGAMLRQGCANKSFSYVNEIIQLSLEEGLKPNEAFLRHLHNFHR 598
            :||::|....:|.:    ..::.|.:|.....::|.|    .::.::.|..|:......|     
plant   611 QLLKEMAALNLKPDSITYSTMIYAFVRVRDFKRAFFY----HKMMVKSGQVPDPRSYEKL----- 666

  Fly   599 GCARAIDARHPSTKTAAFKKGHSKFCDKYRLYYEEQGLSGLKLEDAIAKVKERPYDQFKLPPVNG 663
               |||                                    |||. ||.|.|......|..:|.
plant   667 ---RAI------------------------------------LEDK-AKTKNRKDKTAILGIINS 691

  Fly   664 MEPLKHEQLKHKTKQRK 680
                |..::|.|||.:|
plant   692 ----KFGRVKAKTKGKK 704

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PPR_2 <157..196 CDD:289786 17/136 (13%)
PPR_2 182..231 CDD:289786 22/94 (23%)
PPR 185..215 CDD:279828 13/65 (20%)
PPR repeat 186..213 CDD:276811 13/62 (21%)
PPR repeat 219..252 CDD:276811 8/33 (24%)
PPR_1 252..284 CDD:289614 8/31 (26%)
PPR_2 256..304 CDD:289786 14/47 (30%)
PPR repeat 258..287 CDD:276811 7/28 (25%)
PPR repeat 293..324 CDD:276811 9/30 (30%)
PPR repeat 330..357 CDD:276811 2/26 (8%)
PPR repeat 485..514 CDD:276811 6/32 (19%)
PPR repeat 552..576 CDD:276811 4/23 (17%)
EMB1006NP_199839.1 PPR repeat 240..267 CDD:276811 2/26 (8%)
PPR_2 272..320 CDD:289786 7/47 (15%)
PPR repeat 273..302 CDD:276811 5/28 (18%)
PPR_2 306..356 CDD:289786 14/58 (24%)
PPR repeat 310..338 CDD:276811 8/27 (30%)
PPR_2 350..391 CDD:289786 13/49 (27%)
PPR repeat 350..373 CDD:276811 6/31 (19%)
PPR_2 378..426 CDD:289786 14/47 (30%)
PPR 380..414 CDD:273253 8/33 (24%)
PPR repeat 381..408 CDD:276811 7/26 (27%)
PPR_2 412..461 CDD:289786 13/58 (22%)
PPR repeat 414..443 CDD:276811 9/30 (30%)
PPR 416..449 CDD:273253 10/34 (29%)
PPR_2 447..495 CDD:289786 13/93 (14%)
PPR repeat 449..478 CDD:276811 5/36 (14%)
PPR 451..485 CDD:273253 10/79 (13%)
PPR_2 483..530 CDD:289786 15/52 (29%)
PPR 487..516 CDD:279828 7/34 (21%)
PPR repeat 487..514 CDD:276811 7/32 (22%)
PPR_2 518..567 CDD:289786 12/50 (24%)
PPR repeat 520..549 CDD:276811 8/30 (27%)
PPR repeat 555..580 CDD:276811 5/24 (21%)
PPR_2 556..602 CDD:289786 11/45 (24%)
PPR 556..590 CDD:273253 8/33 (24%)
PPR 584..616 CDD:295754 10/31 (32%)
PPR_2 588..637 CDD:289786 11/48 (23%)
PPR repeat 590..619 CDD:276811 8/28 (29%)
PPR repeat 625..654 CDD:276811 4/32 (13%)
PPR 626..659 CDD:273253 5/36 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 104 1.000 Inparanoid score I2129
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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