DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4611 and AT5G41170

DIOPT Version :9

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_198933.1 Gene:AT5G41170 / 834119 AraportID:AT5G41170 Length:527 Species:Arabidopsis thaliana


Alignment Length:455 Identity:94/455 - (20%)
Similarity:176/455 - (38%) Gaps:90/455 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 FLSNSTRRSKKLKAVEYARQIKDHLKANRLNEAIAVLEQRMLKEDRAKPDKYIYNLLISGCAKAG 198
            ||....:...:...|.:...|......||:.||::::.|  :.|...|||..:|..:|....|.|
plant   129 FLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQ--MVEMGIKPDVVMYTTIIDSLCKNG 191

  Fly   199 YTRKAFFLYTKMRQRGLQVTGGTYTSLFNACANAPSVSDGLAKAQILRENMLEKGYEPNVKNYNA 263
            :...|..|:.:|...|::.....||||.|...|:....|    |..|...|.::..:|:|..:||
plant   192 HVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRD----ADSLLRGMTKRKIKPDVITFNA 252

  Fly   264 MIKAYGRCGDVDTAYMLADEMMERQLELNADTF-----NFLLQACASNSEHGFRHALLTWHNMLQ 323
            :|.|:.:.|....|..|.:||:...:..|..|:     .|.::.|...:...|       :.|..
plant   253 LIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMF-------YLMET 310

  Fly   324 RGISPDYYSF----NAMLRCARDCGFGDLDSMREVIDKIAPSAARKKPVLQLEKGQQDDLPSVEA 384
            :|..||..::    |...:|.:      :|...::..:::            :||       :..
plant   311 KGCFPDVVAYTSLINGFCKCKK------VDDAMKIFYEMS------------QKG-------LTG 350

  Fly   385 NTTTLPAQIEVATTASELELPNLLLPQPHLGSLVALEEVTRPHERFLLLGGLTGFLEHMKQHNIT 449
            ||.|....|:   ...::..||:            .:||                ..||....:.
plant   351 NTITYTTLIQ---GFGQVGKPNV------------AQEV----------------FSHMVSRGVP 384

  Fly   450 PDIETFTAMLEVIPPTNAAEKQLLTF----VRKI-GLKADIDFFNILIKKRSMRFDYESAKEVLL 509
            |:|.|:..:|..:......:|.|:.|    .|:: |:..:|..:|:|:.........|.|..|..
plant   385 PNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFE 449

  Fly   510 MIRTAGLRPDIVTYGVLALG-CRT--QEEARELLEQMHVAGIKMNM----PILGAMLRQGCANKS 567
            .:|...:...|:||.::..| |:.  .:.|..|...:...|:|.|:    .::..:.|:|..:::
plant   450 DMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEA 514

  Fly   568  567
            plant   515  514

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PPR_2 <157..196 CDD:289786 11/38 (29%)
PPR_2 182..231 CDD:289786 15/48 (31%)
PPR 185..215 CDD:279828 7/29 (24%)
PPR repeat 186..213 CDD:276811 7/26 (27%)
PPR repeat 219..252 CDD:276811 10/32 (31%)
PPR_1 252..284 CDD:289614 9/31 (29%)
PPR_2 256..304 CDD:289786 14/52 (27%)
PPR repeat 258..287 CDD:276811 10/28 (36%)
PPR repeat 293..324 CDD:276811 5/35 (14%)
PPR repeat 330..357 CDD:276811 3/30 (10%)
PPR repeat 485..514 CDD:276811 7/28 (25%)
PPR repeat 552..576 CDD:276811 2/20 (10%)
AT5G41170NP_198933.1 PPR repeat 75..101 CDD:276811
PPR_2 106..153 CDD:404055 4/23 (17%)
PPR repeat 109..136 CDD:276811 2/6 (33%)
PLN03218 <135..>527 CDD:215636 92/449 (20%)
PPR repeat 144..171 CDD:276811 6/28 (21%)
PPR repeat 179..206 CDD:276811 7/26 (27%)
PPR repeat 212..241 CDD:276811 10/32 (31%)
PPR repeat 249..276 CDD:276811 9/26 (35%)
PPR repeat 282..311 CDD:276811 5/35 (14%)
PPR repeat 317..346 CDD:276811 3/46 (7%)
PPR repeat 352..381 CDD:276811 9/59 (15%)
PPR repeat 387..416 CDD:276811 6/28 (21%)
PPR repeat 425..489 CDD:276811 14/63 (22%)
PPR repeat 495..524 CDD:276811 2/20 (10%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 104 1.000 Inparanoid score I2129
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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