DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4611 and AT5G39980

DIOPT Version :10

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_198814.1 Gene:AT5G39980 / 833995 AraportID:AT5G39980 Length:678 Species:Arabidopsis thaliana


Alignment Length:570 Identity:116/570 - (20%)
Similarity:220/570 - (38%) Gaps:94/570 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 REEVFEELITAAPKEHQKFKPEKKPKEKST----------KKVQ--DFGDPDTFGDAKVAATEDP 126
            |..:|....:::.:..|..|..:|..||:|          ::.|  .|.|.:...|..:|:....
plant    38 RNLIFTVSASSSSESTQNKKVWRKQPEKNTTSSFQALRKHRRYQRSAFLDHNVDMDELLASIHQT 102

  Fly   127 GDVEEEEFLSNSTRRSKKLKAVEYARQIKDHLKANRLNEAIAVLEQRMLKEDRAKPDKYIYNLLI 191
            .: |:|.|...||.:.::| ::.:...:..  :.|....::|:|:. :.:|.:..|..:.||:::
plant   103 QN-EKELFSLLSTYKDRQL-SIRFMVSLLS--RENDWQRSLALLDW-VHEEAKYTPSVFAYNVVL 162

  Fly   192 SGCAKAGYTRKAFFLYTKMRQRGLQVTGGTYTSLFNACANAPSVSDGLAKAQ-----------IL 245
            ....:|.....|..|:.:||||.|.....||::|..:..........|:..|           :|
plant   163 RNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVL 227

  Fly   246 RENMLE--------------------KGYEPNVKNYNAMIKAYGRCGDVDTAYMLADEMMERQLE 290
            ..|::|                    .|..|::..||:||..||:......|.:|..||.|..:.
plant   228 YSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVL 292

  Fly   291 LNADTFNFLLQACASNSEHGFRHALLTWHNMLQRGISPDYYSFNAMLRCARDCGFGDLDSMREVI 355
            .|..:::.||.....|  |.|..||..:..|.:...:.|..:.|.|:..     :|.||.::|. 
plant   293 PNTVSYSTLLSVYVEN--HKFLEALSVFAEMKEVNCALDLTTCNIMIDV-----YGQLDMVKEA- 349

  Fly   356 DKIAPSAARKKPVLQLEKGQQDDLPSVEANTTTLPAQIEVATTASELELPNLLLPQP------HL 414
            |::..|..:           .|..|:|.:..|.|....|.......:.|..|:..:.      ..
plant   350 DRLFWSLRK-----------MDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTY 403

  Fly   415 GSLVALEEVTRPHERFLLLGGLTGFLEHMKQHNITPDIETFTAMLEVIPPTNAAEKQLLTF--VR 477
            .:::.:...|..||:      .|..::.|:...|.|:..|::.::.:.......::....|  :|
plant   404 NTMIKIYGKTMEHEK------ATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLR 462

  Fly   478 KIGLKADIDFFNILIKKRSMRFDYE------SAKEVLLMIRTAGLRPDIVTYGVLALGCRTQEEA 536
            ..|::.|...:..:|      ..||      .||.:|..::.....|......:||...|| |||
plant   463 SSGVEIDQVLYQTMI------VAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGRT-EEA 520

  Fly   537 RELLEQMHVAGIKMNMPILGAMLRQGCANKSFSYVNEIIQLSLEEGLKPN 586
            ..:..|...:|...::.:.|.|:.....|:.:..|.|:.:.....|..|:
plant   521 TWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPD 570

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PLN03218 <166..>561 CDD:215636 91/439 (21%)
PPR repeat 186..213 CDD:276811 7/26 (27%)
PPR repeat 219..252 CDD:276811 8/63 (13%)
PPR repeat 258..287 CDD:276811 10/28 (36%)
PPR repeat 293..324 CDD:276811 8/30 (27%)
PPR repeat 330..357 CDD:276811 6/26 (23%)
PPR repeat 485..514 CDD:276811 6/34 (18%)
PPR repeat 552..576 CDD:276811 5/23 (22%)
AT5G39980NP_198814.1 PPR repeat 125..149 CDD:276811 3/26 (12%)
PPR repeat 155..184 CDD:276811 7/28 (25%)
PLN03077 <174..672 CDD:215561 89/429 (21%)
PPR repeat 192..219 CDD:276811 5/26 (19%)
PPR repeat 227..254 CDD:276811 3/26 (12%)
PPR repeat 262..289 CDD:276811 10/26 (38%)
PPR repeat 295..324 CDD:276811 8/30 (27%)
PPR repeat 330..359 CDD:276811 8/45 (18%)
PPR repeat 367..394 CDD:276811 5/26 (19%)
PPR repeat 400..429 CDD:276811 5/34 (15%)
PPR repeat 435..464 CDD:276811 3/28 (11%)
PPR repeat 470..497 CDD:276811 6/32 (19%)
PPR repeat 508..530 CDD:276811 8/22 (36%)
PPR repeat 538..565 CDD:276811 5/26 (19%)
PPR repeat 571..600 CDD:276811 116/570 (20%)
PPR repeat 607..635 CDD:276811
Blue background indicates that the domain is not in the aligned region.

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