DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4611 and EMB2744

DIOPT Version :9

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_198784.1 Gene:EMB2744 / 833964 AraportID:AT5G39680 Length:710 Species:Arabidopsis thaliana


Alignment Length:595 Identity:103/595 - (17%)
Similarity:187/595 - (31%) Gaps:228/595 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   132 EEFLSN------STRRSKKLKAVEYARQIKDHLKANRLN---EAIAVLEQ------RMLKEDRAK 181
            |:|:.|      |.|....|:.:..|.|:...:.....|   ||...|..      ::|...|..
plant   231 EDFVWNNLTYLSSLRLFSNLRDLNLALQVHSRMVRFGFNAEVEACGALINMYGKCGKVLYAQRVF 295

  Fly   182 PDKYIYNLLISGCAKAGYTR-----KAFFLYTKMRQRGLQVTGGTYTSLFNACANAPSVSDGLAK 241
            .|.:..|:.::......|.:     :|..|::||..:.:.....|:..|.|:.|....:..|   
plant   296 DDTHAQNIFLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQG--- 357

  Fly   242 AQILRENMLEKGYEPNVKNYNAMIKAYGRCGDVDTAYMLADEMMERQLELNADTFNFLLQACASN 306
             .:|...:|:.||..:|...||::..|.:.|.::.|......|..|.:.    |:|.::..|   
plant   358 -DLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIV----TWNTMISGC--- 414

  Fly   307 SEHGF-RHALLTWHNMLQRGISPDYYSFNAMLRCARDCGFGDLDSMREVIDKIAPSAARKKPVLQ 370
            |.||. |.||..:..|:..|..|:..:|..:|:.....||                         
plant   415 SHHGLGREALEAFDRMIFTGEIPNRITFIGVLQACSHIGF------------------------- 454

  Fly   371 LEKGQQDDLPSVEANTTTLPAQIEVATTASELELPNLLLPQPHLGSLVALEEVTRPHERFLLLGG 435
                                                             :|:            |
plant   455 -------------------------------------------------VEQ------------G 458

  Fly   436 LTGFLEHMKQHNITPDIETFTAMLEVIPPTNAAEKQLLTFVRKIGLKADIDFFNILIKKRSMRFD 500
            |..|.:.||:.::.|||:.:|.::.::              .|.|:..|.:.|            
plant   459 LHYFNQLMKKFDVQPDIQHYTCIVGLL--------------SKAGMFKDAEDF------------ 497

  Fly   501 YESAKEVLLMIRTAGLRPDIVTYGVL----------ALGCRTQEEARE----------LLEQMHV 545
                      :|||.:..|:|.:..|          .||.:..|.|.|          ||..:| 
plant   498 ----------MRTAPIEWDVVAWRTLLNACYVRRNYRLGKKVAEYAIEKYPNDSGVYVLLSNIH- 551

  Fly   546 AGIKMNMPILGAMLRQGCANKSFSYVNEIIQLSLEEGLK--PNEAFLRHLHNFHRGCARAIDARH 608
                             ..::.:..|.::..|....|:|  |..:::...:..|...|.  |.:|
plant   552 -----------------AKSREWEGVAKVRSLMNNRGVKKEPGVSWIGIRNQTHVFLAE--DNQH 597

  Fly   609 PSTKTAAFKKGHSKFCDKYRLYYEEQGLSGLKLEDAIAKVKERPYDQFKLPPVNGM-----EPLK 668
            |                :..|.|       .|:::.::|:|...|.    |.|.|.     |..:
plant   598 P----------------EITLIY-------AKVKEVMSKIKPLGYS----PDVAGAFHDVDEEQR 635

  Fly   669 HEQLKHKTKQ 678
            .:.|.:.:::
plant   636 EDNLSYHSEK 645

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PPR_2 <157..196 CDD:289786 8/47 (17%)
PPR_2 182..231 CDD:289786 10/53 (19%)
PPR 185..215 CDD:279828 6/34 (18%)
PPR repeat 186..213 CDD:276811 6/31 (19%)
PPR repeat 219..252 CDD:276811 7/32 (22%)
PPR_1 252..284 CDD:289614 8/31 (26%)
PPR_2 256..304 CDD:289786 10/47 (21%)
PPR repeat 258..287 CDD:276811 7/28 (25%)
PPR repeat 293..324 CDD:276811 10/31 (32%)
PPR repeat 330..357 CDD:276811 4/26 (15%)
PPR repeat 485..514 CDD:276811 2/28 (7%)
PPR repeat 552..576 CDD:276811 1/23 (4%)
EMB2744NP_198784.1 PLN03077 <37..708 CDD:215561 103/595 (17%)
PPR repeat 73..98 CDD:276811
PPR repeat 100..129 CDD:276811
PPR repeat 171..197 CDD:276811
PPR repeat 204..231 CDD:276811 103/595 (17%)
PPR repeat 239..266 CDD:276811 5/26 (19%)
PPR repeat 272..301 CDD:276811 6/28 (21%)
PPR repeat 307..332 CDD:276811 5/24 (21%)
PPR repeat 377..402 CDD:276811 6/24 (25%)
PPR repeat 406..433 CDD:276811 10/29 (34%)
PPR repeat 439..469 CDD:276811 10/115 (9%)
PPR repeat 475..499 CDD:276811 6/59 (10%)
PPR repeat 507..536 CDD:276811 6/28 (21%)
PPR repeat 541..567 CDD:276811 4/43 (9%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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