DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4611 and AT5G24830

DIOPT Version :10

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_568460.1 Gene:AT5G24830 / 832552 AraportID:AT5G24830 Length:593 Species:Arabidopsis thaliana


Alignment Length:579 Identity:115/579 - (19%)
Similarity:197/579 - (34%) Gaps:193/579 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   112 PDTFGDAKVAATE----DPGDVEEEE-----------FLSNSTRRSKKL-------KAVEY---- 150
            |...|:.....||    |..|.:::|           .|.:|..|...|       |:.:|    
plant    57 PSISGNHSHLCTEKWFSDQKDYDQKEDPEAIFNVLDYILKSSLDRLASLRESVCQTKSFDYDDCL 121

  Fly   151 ---ARQIKDHLKANRLNEAIAVLEQRMLKEDRAKPDKYIYNLLISGCAKAGYTRKAFFLYTKMRQ 212
               :..::|.....:|:.|: .|.::|:... ..|....:|.|::|..||||..||         
plant   122 SIHSSIMRDLCLQGKLDAAL-WLRKKMIYSG-VIPGLITHNHLLNGLCKAGYIEKA--------- 175

  Fly   213 RGLQVTGGTYTSLFNACANAPSVSDGLAKAQILRENMLEKGYEPNVKNYNAMIKAYGRCGDVDTA 277
                                    |||.:      .|.|.|..||..:||.:||......:||.|
plant   176 ------------------------DGLVR------EMREMGPSPNCVSYNTLIKGLCSVNNVDKA 210

  Fly   278 YMLADEMMERQLELNADTFNFLLQACASNSEHGFRHALLTWHNMLQRGISPDYYSFNAMLRCARD 342
            ..|.:.|.:..:..|..|.|.::                  |.:.|:|:                
plant   211 LYLFNTMNKYGIRPNRVTCNIIV------------------HALCQKGV---------------- 241

  Fly   343 CGFGDLDSMREVIDKIAPSAARKKPVLQLEKGQQDDLPSVEANTTTLPAQIEVATTASELELPNL 407
            .|..:...:.|::|                        |.:||.   |..|.:.|...:....| 
plant   242 IGNNNKKLLEEILD------------------------SSQANA---PLDIVICTILMDSCFKN- 278

  Fly   408 LLPQPHLGSLVALEEVTRPHERFLLLGGLTGFLEHMKQHNITPDIETFTAMLEVIPPTN---AAE 469
                   |::|...||.:                .|.|.|:..|...:..::..:..:.   ||.
plant   279 -------GNVVQALEVWK----------------EMSQKNVPADSVVYNVIIRGLCSSGNMVAAY 320

  Fly   470 KQLLTFVRKIGLKADIDFFNILIKKRSMRFDYESAKEVLLMIRTAGLRPDIVTYGVLALG-C--- 530
            ..:...|:: |:..|:..:|.||........::.|.::...::..|:.||.::|.|:..| |   
plant   321 GFMCDMVKR-GVNPDVFTYNTLISALCKEGKFDEACDLHGTMQNGGVAPDQISYKVIIQGLCIHG 384

  Fly   531 ---RTQEEARELLEQMHVAGIKMNMPILGAMLRQGCANKSFSYVNEIIQLSLEEGLKPNEAFLRH 592
               |..|....:|:...:..:.:...::....|.|..:.:.|.:|    |.|..|:||| .:..:
plant   385 DVNRANEFLLSMLKSSLLPEVLLWNVVIDGYGRYGDTSSALSVLN----LMLSYGVKPN-VYTNN 444

  Fly   593 --LHNFHRGCARAIDA-----------RHPSTKT------AAFKKGHSKFCDKYRLYYE 632
              :|.:.:| .|.|||           .||.|.|      ||...||.:..  ::||.|
plant   445 ALIHGYVKG-GRLIDAWWVKNEMRSTKIHPDTTTYNLLLGAACTLGHLRLA--FQLYDE 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PLN03218 <166..>561 CDD:215636 73/404 (18%)
PPR repeat 186..213 CDD:276811 9/26 (35%)
PPR repeat 219..252 CDD:276811 4/32 (13%)
PPR repeat 258..287 CDD:276811 9/28 (32%)
PPR repeat 293..324 CDD:276811 3/30 (10%)
PPR repeat 330..357 CDD:276811 2/26 (8%)
PPR repeat 485..514 CDD:276811 4/28 (14%)
PPR repeat 552..576 CDD:276811 4/23 (17%)
AT5G24830NP_568460.1 PPR repeat 125..150 CDD:276811 5/25 (20%)
PPR_2 126..168 CDD:463778 9/43 (21%)
PPR_2 154..202 CDD:463778 22/86 (26%)
PPR repeat 158..185 CDD:276811 13/65 (20%)
PPR_2 189..238 CDD:463778 15/66 (23%)
PPR repeat 191..220 CDD:276811 9/28 (32%)
PLN03218 <264..>551 CDD:215636 57/270 (21%)
PPR repeat 267..294 CDD:276811 7/50 (14%)
PPR repeat 300..329 CDD:276811 3/28 (11%)
PPR repeat 335..362 CDD:276811 4/26 (15%)
PPR repeat 408..434 CDD:276811 6/29 (21%)
PPR repeat 442..469 CDD:276811 6/27 (22%)
PPR repeat 475..504 CDD:276811 9/28 (32%)
PPR repeat 510..537 CDD:276811
PPR repeat 545..570 CDD:276811
Blue background indicates that the domain is not in the aligned region.

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