DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG4611 and AT5G24830

DIOPT Version :9

Sequence 1:	NP_647949.1	Gene:	CG4611 / 38601	FlyBaseID:	FBgn0035591	Length:	703	Species:	Drosophila melanogaster
Sequence 2:	NP_568460.1	Gene:	AT5G24830 / 832552	AraportID:	AT5G24830	Length:	593	Species:	Arabidopsis thaliana

Alignment Length:	579	Identity:	115/579 - (19%)
Similarity:	197/579 - (34%)	Gaps:	193/579 - (33%)

- Green bases have known domain annotations that are detailed below.

  Fly   112 PDTFGDAKVAATE----DPGDVEEEE-----------FLSNSTRRSKKL-------KAVEY---- 150
            |...|:.....||    |..|.:::|           .|.:|..|...|       |:.:|
plant    57 PSISGNHSHLCTEKWFSDQKDYDQKEDPEAIFNVLDYILKSSLDRLASLRESVCQTKSFDYDDCL 121

  Fly   151 ---ARQIKDHLKANRLNEAIAVLEQRMLKEDRAKPDKYIYNLLISGCAKAGYTRKAFFLYTKMRQ 212
               :..::|.....:|:.|: .|.::|:... ..|....:|.|::|..||||..||
plant   122 SIHSSIMRDLCLQGKLDAAL-WLRKKMIYSG-VIPGLITHNHLLNGLCKAGYIEKA--------- 175

  Fly   213 RGLQVTGGTYTSLFNACANAPSVSDGLAKAQILRENMLEKGYEPNVKNYNAMIKAYGRCGDVDTA 277
                                    |||.:      .|.|.|..||..:||.:||......:||.|
plant   176 ------------------------DGLVR------EMREMGPSPNCVSYNTLIKGLCSVNNVDKA 210

  Fly   278 YMLADEMMERQLELNADTFNFLLQACASNSEHGFRHALLTWHNMLQRGISPDYYSFNAMLRCARD 342
            ..|.:.|.:..:..|..|.|.::                  |.:.|:|:
plant   211 LYLFNTMNKYGIRPNRVTCNIIV------------------HALCQKGV---------------- 241

  Fly   343 CGFGDLDSMREVIDKIAPSAARKKPVLQLEKGQQDDLPSVEANTTTLPAQIEVATTASELELPNL 407
            .|..:...:.|::|                        |.:||.   |..|.:.|...:....|
plant   242 IGNNNKKLLEEILD------------------------SSQANA---PLDIVICTILMDSCFKN- 278

  Fly   408 LLPQPHLGSLVALEEVTRPHERFLLLGGLTGFLEHMKQHNITPDIETFTAMLEVIPPTN---AAE 469
                   |::|...||.:                .|.|.|:..|...:..::..:..:.   ||.
plant   279 -------GNVVQALEVWK----------------EMSQKNVPADSVVYNVIIRGLCSSGNMVAAY 320

  Fly   470 KQLLTFVRKIGLKADIDFFNILIKKRSMRFDYESAKEVLLMIRTAGLRPDIVTYGVLALG-C--- 530
            ..:...|:: |:..|:..:|.||........::.|.::...::..|:.||.::|.|:..| |
plant   321 GFMCDMVKR-GVNPDVFTYNTLISALCKEGKFDEACDLHGTMQNGGVAPDQISYKVIIQGLCIHG 384

  Fly   531 ---RTQEEARELLEQMHVAGIKMNMPILGAMLRQGCANKSFSYVNEIIQLSLEEGLKPNEAFLRH 592
               |..|....:|:...:..:.:...::....|.|..:.:.|.:|    |.|..|:||| .:..:
plant   385 DVNRANEFLLSMLKSSLLPEVLLWNVVIDGYGRYGDTSSALSVLN----LMLSYGVKPN-VYTNN 444

  Fly   593 --LHNFHRGCARAIDA-----------RHPSTKT------AAFKKGHSKFCDKYRLYYE 632
              :|.:.:| .|.|||           .||.|.|      ||...||.:..  ::||.|
plant   445 ALIHGYVKG-GRLIDAWWVKNEMRSTKIHPDTTTYNLLLGAACTLGHLRLA--FQLYDE 500

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
CG4611	NP_647949.1	PPR_2	<157..196	CDD:289786	8/38 (21%)
		PPR_2	182..231	CDD:289786	10/48 (21%)
		PPR	185..215	CDD:279828	9/29 (31%)
		PPR repeat	186..213	CDD:276811	9/26 (35%)
		PPR repeat	219..252	CDD:276811	4/32 (13%)
		PPR_1	252..284	CDD:289614	11/31 (35%)
		PPR_2	256..304	CDD:289786	14/47 (30%)
		PPR repeat	258..287	CDD:276811	9/28 (32%)
		PPR repeat	293..324	CDD:276811	3/30 (10%)
		PPR repeat	330..357	CDD:276811	2/26 (8%)
		PPR repeat	485..514	CDD:276811	4/28 (14%)
		PPR repeat	552..576	CDD:276811	4/23 (17%)
AT5G24830	NP_568460.1	PPR repeat	125..150	CDD:276811	5/25 (20%)
		PPR_2	126..168	CDD:289786	9/43 (21%)
		PPR_1	151..183	CDD:289614	13/71 (18%)
		PPR_2	154..202	CDD:289786	22/86 (26%)
		PPR repeat	158..185	CDD:276811	13/65 (20%)
		PPR_1	185..217	CDD:289614	11/31 (35%)
		PPR_2	189..238	CDD:289786	15/66 (23%)
		PPR repeat	191..220	CDD:276811	9/28 (32%)
		PPR	221..>240	CDD:295754	5/36 (14%)
		PPR_2	264..311	CDD:289786	11/70 (16%)
		PPR	266..300	CDD:273253	9/57 (16%)
		PPR repeat	267..294	CDD:276811	7/50 (14%)
		PPR_2	299..347	CDD:289786	9/48 (19%)
		PPR repeat	300..329	CDD:276811	3/28 (11%)
		PPR	301..335	CDD:273253	4/34 (12%)
		PPR_1	329..362	CDD:289614	6/33 (18%)
		PPR_2	333..381	CDD:289786	11/47 (23%)
		PPR repeat	335..362	CDD:276811	4/26 (15%)
		PPR_2	403..452	CDD:289786	11/53 (21%)
		PPR	408..440	CDD:273253	10/36 (28%)
		PPR repeat	408..434	CDD:276811	6/29 (21%)
		PPR_1	435..467	CDD:289614	10/33 (30%)
		PPR repeat	442..469	CDD:276811	6/27 (22%)
		PPR_2	473..521	CDD:289786	10/30 (33%)
		PPR repeat	475..504	CDD:276811	9/28 (32%)
		PPR	477..510	CDD:273253	8/26 (31%)
		PPR_1	504..533	CDD:289614
		PPR repeat	510..537	CDD:276811
		PPR repeat	545..570	CDD:276811
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	0	0.000