DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4611 and AT5G11310

DIOPT Version :9

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_196692.1 Gene:AT5G11310 / 831002 AraportID:AT5G11310 Length:602 Species:Arabidopsis thaliana


Alignment Length:276 Identity:61/276 - (22%)
Similarity:107/276 - (38%) Gaps:51/276 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 KLKAVEYARQIKDHLK--------------------ANRLNEAIAVLEQRMLKEDRAKPDKYIYN 188
            :::.|:.|.::.:.:|                    |.||:||:.::|:..:.|  :.|....||
plant   297 RMRRVQIAMEVLEEMKMAEMEINFMVFNPIIDGLGEAGRLSEALGMMERFFVCE--SGPTIVTYN 359

  Fly   189 LLISGCAKAGYTRKAFFLYTKMRQRGLQVTGGTYTSLFNACANAPSVSDGLAKAQILRENMLEKG 253
            .|:....|||....|..:...|..||:..|..||...|...:......:|:.    |...::|.|
plant   360 SLVKNFCKAGDLPGASKILKMMMTRGVDPTTTTYNHFFKYFSKHNKTEEGMN----LYFKLIEAG 420

  Fly   254 YEPNVKNYNAMIKAYGRCGDVDTAYMLADEMMERQLELNADTFNFLLQ-ACASNS-EHGFRHALL 316
            :.|:...|:.::|.....|.:..|..:..||..|.::.:..|...|:. .|.... |..|..   
plant   421 HSPDRLTYHLILKMLCEDGKLSLAMQVNKEMKNRGIDPDLLTTTMLIHLLCRLEMLEEAFEE--- 482

  Fly   317 TWHNMLQRGISPDYYSFNAMLRCARDCGFGDL------------------DSMREVIDKIAPSAA 363
             :.|.::|||.|.|.:|..:....|..|..|:                  ::.||.:| ..|...
plant   483 -FDNAVRRGIIPQYITFKMIDNGLRSKGMSDMAKRLSSLMSSLPHSKKLPNTYREAVD-APPDKD 545

  Fly   364 RKKPVLQLEKGQQDDL 379
            |:|.:|...:...|.|
plant   546 RRKSILHRAEAMSDVL 561

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PPR_2 <157..196 CDD:289786 12/58 (21%)
PPR_2 182..231 CDD:289786 15/48 (31%)
PPR 185..215 CDD:279828 9/29 (31%)
PPR repeat 186..213 CDD:276811 8/26 (31%)
PPR repeat 219..252 CDD:276811 5/32 (16%)
PPR_1 252..284 CDD:289614 6/31 (19%)
PPR_2 256..304 CDD:289786 10/48 (21%)
PPR repeat 258..287 CDD:276811 6/28 (21%)
PPR repeat 293..324 CDD:276811 6/32 (19%)
PPR repeat 330..357 CDD:276811 7/44 (16%)
PPR repeat 485..514 CDD:276811
PPR repeat 552..576 CDD:276811
AT5G11310NP_196692.1 PPR repeat 135..165 CDD:276811
PPR repeat 173..197 CDD:276811
PPR repeat 217..244 CDD:276811
PLN03218 <218..>501 CDD:215636 49/213 (23%)
PPR repeat 252..279 CDD:276811
PPR repeat 285..314 CDD:276811 3/16 (19%)
PPR repeat 320..345 CDD:276811 5/24 (21%)
PPR repeat 357..384 CDD:276811 8/26 (31%)
PPR repeat 390..419 CDD:276811 5/32 (16%)
PPR repeat 425..454 CDD:276811 6/28 (21%)
PPR repeat 460..489 CDD:276811 6/32 (19%)
PPR repeat 495..521 CDD:276811 5/25 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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