DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4611 and AT5G08310

DIOPT Version :9

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_001318509.1 Gene:AT5G08310 / 830727 AraportID:AT5G08310 Length:832 Species:Arabidopsis thaliana


Alignment Length:756 Identity:156/756 - (20%)
Similarity:274/756 - (36%) Gaps:185/756 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 SRLVILPATWS--CSQNRLLHVRITDQQAGLETKREANRNQNPFREEVFEELITAAPKEHQKFKP 94
            ||:.:|...:|  ..|.:|||..:|       ||.:..|..:|.:.::.:.||....:  |.|.|
plant     4 SRIALLCQRFSRQQQQRQLLHRPLT-------TKLDNTRFLHPNQSKLAQNLIVIFTR--QPFSP 59

  Fly    95 EKKPK------EKSTKKVQD-FGDPDTFGDAKVA---ATEDPGDVEEEEFLSNS-------TRRS 142
            : .|:      |.:||.|:. ......:|.|.:.   |::..| ...:.:..|:       .|::
plant    60 D-DPELLILSPELNTKVVETVLNGFKRWGLAYLFFNWASKQEG-YRNDMYAYNAMASILSRARQN 122

  Fly   143 KKLKAVEYARQIKDHLKANRLNEAIAVLEQRMLKEDRAKPDKYIYNLLISGCAKAGYTRKAFFLY 207
            ..|||:                 .:.||..|......|      :...|.....||...:|..::
plant   123 ASLKAL-----------------VVDVLNSRCFMSPGA------FGFFIRCLGNAGLVDEASSVF 164

  Fly   208 TKMRQRGLQVTGG-TYTSLFNACANAPSVSDGLAKAQILRENMLEKGYE-------PNVKNY--- 261
            .::|:.||.|... ||..|..|.:.:.|.|..|.:|::  :.|.:.|:.       |.::.|   
plant   165 DRVREMGLCVPNAYTYNCLLEAISKSNSSSVELVEARL--KEMRDCGFHFDKFTLTPVLQVYCNT 227

  Fly   262 ------------------------NAMIKAYGRCGDVDTAYMLADEMMERQLELNADTFNFLLQA 302
                                    ..::.::.:.|.||.|:.|.:.:.||.:.||..|:..|:  
plant   228 GKSERALSVFNEILSRGWLDEHISTILVVSFCKWGQVDKAFELIEMLEERDIRLNYKTYCVLI-- 290

  Fly   303 CASNSEHGF------RHALLTWHNMLQRGISPDYYSFNAMLRCARDCGFGDLDSMREVIDKIAPS 361
                  |||      ..|...:..|.:.|::.|...::.::  ...|...||:....:..:|   
plant   291 ------HGFVKESRIDKAFQLFEKMRRMGMNADIALYDVLI--GGLCKHKDLEMALSLYLEI--- 344

  Fly   362 AARKKPVLQLEKGQQDDLPSVEANTTTLPAQIEVATTASELELPNLLLPQPHL------GSLVAL 420
               |:..:..::|....|....:..:.|....||  ...:::..:::|....|      ..||  
plant   345 ---KRSGIPPDRGILGKLLCSFSEESELSRITEV--IIGDIDKKSVMLLYKSLFEGFIRNDLV-- 402

  Fly   421 EEVTRPHERFLLLGGLTGFLEH---------MKQHN--ITPDIETFTAMLEVIPPTNAAEK--QL 472
                  ||.:..:..|.|..|.         :|.||  |.||.::.:.::..:...|..:.  .|
plant   403 ------HEAYSFIQNLMGNYESDGVSEIVKLLKDHNKAILPDSDSLSIVINCLVKANKVDMAVTL 461

  Fly   473 LTFVRKIGLKADIDFFNILIKKRSMRFDYESAKEVLLMIRTAGLRPDIVT----YGVLALGCRTQ 533
            |..:.:.||......:|.:|:........|.:.::|..::.||:.|...|    ||.||..| ..
plant   462 LHDIVQNGLIPGPMMYNNIIEGMCKEGRSEESLKLLGEMKDAGVEPSQFTLNCIYGCLAERC-DF 525

  Fly   534 EEARELLEQMHVAG----IKMNMPILGAMLRQGCANKSFSYVNE----------IIQLSLEEGLK 584
            ..|.:||::|...|    ||....::..:...|.|..:..|:::          :...:..:||.
plant   526 VGALDLLKKMRFYGFEPWIKHTTFLVKKLCENGRAVDACKYLDDVAGEGFLGHMVASTAAIDGLI 590

  Fly   585 PNEAFLRHLHNFHRGCARA----IDARHPSTKTAAFKKGHSKFCDKYRLYYEEQGLSGLK----- 640
            .||...|.|..|...||..    :.|.|...| |..|...:...|   :.:.|....|||     
plant   591 KNEGVDRGLELFRDICANGHCPDVIAYHVLIK-ALCKACRTMEAD---ILFNEMVSKGLKPTVAT 651

  Fly   641 ---LEDAIAKVKE---------RPYDQFKLPPVNGMEPLKH 669
               :.|...|..|         |.|:..|.|.|.....|.|
plant   652 YNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIH 692

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PPR_2 <157..196 CDD:289786 5/38 (13%)
PPR_2 182..231 CDD:289786 12/49 (24%)
PPR 185..215 CDD:279828 5/29 (17%)
PPR repeat 186..213 CDD:276811 5/26 (19%)
PPR repeat 219..252 CDD:276811 9/33 (27%)
PPR_1 252..284 CDD:289614 8/65 (12%)
PPR_2 256..304 CDD:289786 13/74 (18%)
PPR repeat 258..287 CDD:276811 6/55 (11%)
PPR repeat 293..324 CDD:276811 7/36 (19%)
PPR repeat 330..357 CDD:276811 3/26 (12%)
PPR repeat 485..514 CDD:276811 4/28 (14%)
PPR repeat 552..576 CDD:276811 3/33 (9%)
AT5G08310NP_001318509.1 PPR repeat 108..135 CDD:276811 7/43 (16%)
PPR repeat 141..170 CDD:276811 6/34 (18%)
PPR_2 148..189 CDD:404055 12/40 (30%)
PPR repeat 179..208 CDD:276811 9/30 (30%)
PLN03218 <210..>609 CDD:215636 82/425 (19%)
PPR repeat 216..243 CDD:276811 2/26 (8%)
PPR repeat 252..277 CDD:276811 5/24 (21%)
PPR repeat 283..312 CDD:276811 7/36 (19%)
PPR repeat 318..347 CDD:276811 5/36 (14%)
PPR repeat 389..415 CDD:276811 6/33 (18%)
PPR repeat 441..468 CDD:276811 3/26 (12%)
PPR repeat 474..503 CDD:276811 4/28 (14%)
PPR repeat 509..536 CDD:276811 9/27 (33%)
PPR repeat 544..569 CDD:276811 5/24 (21%)
PPR repeat 586..608 CDD:276811 8/21 (38%)
PPR_2 612..661 CDD:404055 11/52 (21%)
PPR repeat 616..643 CDD:276811 7/30 (23%)
PPR 651..684 CDD:273253 7/32 (22%)
PPR repeat 651..678 CDD:276811 5/26 (19%)
PPR_2 682..731 CDD:404055 4/11 (36%)
PPR repeat 684..713 CDD:276811 3/9 (33%)
PPR_2 717..757 CDD:404055
PPR repeat 719..748 CDD:276811
PPR repeat 754..783 CDD:276811
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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