DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4611 and AT5G06400

DIOPT Version :9

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_196258.1 Gene:AT5G06400 / 830528 AraportID:AT5G06400 Length:1030 Species:Arabidopsis thaliana


Alignment Length:378 Identity:86/378 - (22%)
Similarity:139/378 - (36%) Gaps:92/378 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 LQLNATG------RRLNSYNISRLVILPATWSCSQNRLLHVRITDQQAGLETKREANRNQNPFRE 75
            :|...||      |.........|:...:|:.|    |:.|....:...:|   ||.|       
plant   721 MQYGRTGLTNIAIRTFKEMKDMGLIPSSSTFKC----LITVLCEKKGRNVE---EATR------- 771

  Fly    76 EVFEELITAAPKEHQKFKPEKKPKEKSTKKVQDFGDPDTFGDAKVAATEDPGDVEEEEFLSNSTR 140
             .|.|:|.:.      |.|::       :.|||:          :....:.|:.::.:...:|..
plant   772 -TFREMIRSG------FVPDR-------ELVQDY----------LGCLCEVGNTKDAKSCLDSLG 812

  Fly   141 RSKKLKAVEYARQIKDHLKANRLNEAIAVLEQRMLKEDRAKPDKYIYNLLISGCAKAGYTRKAFF 205
            :......|.|:..|:...:..:|.||::  |....:.:|:..|:|.|..::.|..:.|..:||..
plant   813 KIGFPVTVAYSIYIRALCRIGKLEEALS--ELASFEGERSLLDQYTYGSIVHGLLQRGDLQKALD 875

  Fly   206 LYTKMRQRGLQVTGGTYTSLFNACANAPSVSDGLAKAQILRENMLEK-----------GYEPNVK 259
            ....|::.|.:.....||||.               ....:|..|||           ..||:|.
plant   876 KVNSMKEIGTKPGVHVYTSLI---------------VYFFKEKQLEKVLETCQKMEGESCEPSVV 925

  Fly   260 NYNAMIKAYGRCGDVDTAYMLADEMMERQLELNADTF----NFLLQACASNSEHGFRHALLTWHN 320
            .|.|||..|...|.|:.|:.....|.||....:..|:    |.|.|||.|..      ||.....
plant   926 TYTAMICGYMSLGKVEEAWNAFRNMEERGTSPDFKTYSKFINCLCQACKSED------ALKLLSE 984

  Fly   321 MLQRGISPDYYSFNAMLRCARDCGFGDLDSMREVIDKIAPSAARKKPVLQLEK 373
            ||.:||:|...:|..:        |..|:  ||....:|..|.:||..|..::
plant   985 MLDKGIAPSTINFRTV--------FYGLN--REGKHDLARIALQKKSALVAQR 1027

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PPR_2 <157..196 CDD:289786 9/38 (24%)
PPR_2 182..231 CDD:289786 13/48 (27%)
PPR 185..215 CDD:279828 7/29 (24%)
PPR repeat 186..213 CDD:276811 6/26 (23%)
PPR repeat 219..252 CDD:276811 6/32 (19%)
PPR_1 252..284 CDD:289614 12/42 (29%)
PPR_2 256..304 CDD:289786 18/51 (35%)
PPR repeat 258..287 CDD:276811 10/28 (36%)
PPR repeat 293..324 CDD:276811 11/34 (32%)
PPR repeat 330..357 CDD:276811 5/26 (19%)
PPR repeat 485..514 CDD:276811
PPR repeat 552..576 CDD:276811
AT5G06400NP_196258.1 PPR repeat 191..218 CDD:276811
PPR_2 192..236 CDD:289786
PPR_2 222..270 CDD:289786
PPR repeat 224..253 CDD:276811
PPR 225..259 CDD:273253
PPR_2 258..306 CDD:289786
PPR repeat 259..288 CDD:276811
PPR 261..290 CDD:273253
PPR repeat 294..322 CDD:276811
PPR_2 330..376 CDD:289786
PPR repeat 364..393 CDD:276811
PPR_2 369..408 CDD:289786
PPR_2 397..445 CDD:289786
PPR repeat 400..427 CDD:276811
PPR_2 431..478 CDD:289786
PPR 435..468 CDD:273253
PPR repeat 435..462 CDD:276811
PPR_2 466..515 CDD:289786
PPR repeat 468..497 CDD:276811
PPR repeat 503..529 CDD:276811
PPR repeat 538..566 CDD:276811
PPR repeat 680..707 CDD:276811
PPR_2 715..759 CDD:289786 9/41 (22%)
PPR repeat 715..742 CDD:276811 4/20 (20%)
PPR repeat 748..779 CDD:276811 11/45 (24%)
PPR 750..784 CDD:273253 12/54 (22%)
PPR_2 817..864 CDD:289786 11/48 (23%)
PPR repeat 821..848 CDD:276811 6/28 (21%)
PPR_2 853..896 CDD:289786 12/42 (29%)
PPR repeat 856..883 CDD:276811 6/26 (23%)
PPR_2 887..934 CDD:289786 15/61 (25%)
PPR repeat 891..918 CDD:276811 8/41 (20%)
PPR_2 922..971 CDD:289786 16/48 (33%)
PPR repeat 924..953 CDD:276811 10/28 (36%)
PPR 925..958 CDD:273253 11/32 (34%)
PPR_2 957..1004 CDD:289786 16/60 (27%)
PPR repeat 959..988 CDD:276811 11/34 (32%)
PPR 961..994 CDD:273253 14/38 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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