DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4611 and EMB3131

DIOPT Version :9

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_193806.1 Gene:EMB3131 / 827823 AraportID:AT4G20740 Length:727 Species:Arabidopsis thaliana


Alignment Length:605 Identity:121/605 - (20%)
Similarity:214/605 - (35%) Gaps:169/605 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 NRLLHVRITDQQAGLETKREANRNQNPFREEVFEELITAAPKEHQKFKP----EK------KPKE 100
            ||..|.|..||...|     .:....|..|:.||.||.......:..:.    ||      ||:.
plant   169 NRNGHFRAADQLPEL-----MDSQGRPPSEKQFEILIRMHADNRRGLRVYYVYEKMKKFGFKPRV 228

  Fly   101 KSTKKVQDFGDPDTFGDAKVAATED---PGDVEE-----------------EEFLSNSTRRSKKL 145
            ....::.|....:.:.|..:|..||   .|.|||                 ||.|....|..:.|
plant   229 FLYNRIMDALVKNGYFDLALAVYEDFKEDGLVEESTTFMILVKGLCKAGRIEEMLEILQRMRENL 293

  Fly   146 ---KAVEYARQIKDHLKANRLNEAIAVLEQRMLKEDRAKPDKYIYNLLISGCAKAGYTRKAFFLY 207
               ....|...||..:....|:.::.|.::  ::.|..|||...|..|:.|..|.|...:.:.|:
plant   294 CKPDVFAYTAMIKTLVSEGNLDASLRVWDE--MRRDEIKPDVMAYGTLVVGLCKDGRVERGYELF 356

  Fly   208 TKMRQRGLQVTGGTYTSLFNACANAPSVSDGLAKAQI-LRENMLEKGYEPNVKNYNAMIKAYGRC 271
            .:|:.:.:.:....|..|...     .|:||..::.. |.|::::.||..::..|||:||.....
plant   357 MEMKGKQILIDREIYRVLIEG-----FVADGKVRSACNLWEDLVDSGYIADIGIYNAVIKGLCSV 416

  Fly   272 GDVDTAYMLADEMMERQLELNADTFNFLLQA---------------------------------- 302
            ..||.||.|....:|.:||.:.:|.:.::.|                                  
plant   417 NQVDKAYKLFQVAIEEELEPDFETLSPIMVAYVVMNRLSDFSNVLERIGELGYPVSDYLTQFFKL 481

  Fly   303 -CASNSE---------------HG-----------------FRHALLTWHNMLQRGISPDYYSFN 334
             ||...:               ||                 .:.:|..::.|.:.|..||..|::
plant   482 LCADEEKNAMALDVFYILKTKGHGSVSVYNILMEALYKMGDIQKSLSLFYEMRKLGFEPDSSSYS 546

  Fly   335 AMLRCARDCGFGDLDSMREVIDKI-----APSAARKKPVLQLEKG--QQDDLPSVE-------AN 385
            ..:.|..:  .||:.:.....:||     .||.|   ..|.|.||  |..::.:|.       .|
plant   547 IAICCFVE--KGDVKAACSFHEKIIEMSCVPSIA---AYLSLTKGLCQIGEIDAVMLLVRECLGN 606

  Fly   386 TTTLPAQIEVATTASELELPNLLLPQPHLGSLVALEEVTRPHERFLLLGGLTGFLEHMKQHNITP 450
            ..:.|.:.:.|.|..            |:......|:|.:             .::.|.|..:..
plant   607 VESGPMEFKYALTVC------------HVCKGSNAEKVMK-------------VVDEMNQEGVFI 646

  Fly   451 DIETFTAMLEVIPP--TNAAEKQLLTFV--RKIGLKADIDFFNILIKKRSMRFDYESAKEVLLMI 511
            :...:.|::..:..  |....:::.|.:  ||:..:||:..:..::.:::.:   ::|..||..|
plant   647 NEVIYCAIISGMSKHGTIKVAREVFTELKKRKVMTEADMVVYEEMLIEQTKK---KTADLVLSGI 708

  Fly   512 RTAGLRPDIVTYGVLALGCR 531
            :..||...:     .|.|||
plant   709 KFFGLESKL-----RAKGCR 723

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PPR_2 <157..196 CDD:289786 9/38 (24%)
PPR_2 182..231 CDD:289786 11/48 (23%)
PPR 185..215 CDD:279828 7/29 (24%)
PPR repeat 186..213 CDD:276811 7/26 (27%)
PPR repeat 219..252 CDD:276811 7/33 (21%)
PPR_1 252..284 CDD:289614 12/31 (39%)
PPR_2 256..304 CDD:289786 15/82 (18%)
PPR repeat 258..287 CDD:276811 10/28 (36%)
PPR repeat 293..324 CDD:276811 8/97 (8%)
PPR repeat 330..357 CDD:276811 4/26 (15%)
PPR repeat 485..514 CDD:276811 4/28 (14%)
PPR repeat 552..576 CDD:276811
EMB3131NP_193806.1 PLN03218 <142..>588 CDD:215636 93/435 (21%)
PPR repeat 160..187 CDD:276811 7/22 (32%)
PPR repeat 198..222 CDD:276811 4/23 (17%)
PPR repeat 230..257 CDD:276811 5/26 (19%)
PPR repeat 265..292 CDD:276811 4/26 (15%)
PPR repeat 298..327 CDD:276811 5/30 (17%)
PPR repeat 333..362 CDD:276811 7/28 (25%)
PPR repeat 368..397 CDD:276811 7/33 (21%)
PPR repeat 403..432 CDD:276811 10/28 (36%)
PPR repeat 438..466 CDD:276811 2/27 (7%)
PPR repeat 509..536 CDD:276811 2/26 (8%)
PPR repeat 542..571 CDD:276811 6/30 (20%)
PPR repeat 577..602 CDD:276811 7/27 (26%)
PPR repeat 648..677 CDD:276811 3/28 (11%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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