DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4611 and AT3G53170

DIOPT Version :9

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_001319735.1 Gene:AT3G53170 / 824483 AraportID:AT3G53170 Length:499 Species:Arabidopsis thaliana


Alignment Length:483 Identity:98/483 - (20%)
Similarity:173/483 - (35%) Gaps:138/483 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 KKPKEKSTKKVQDFGDPDTFGDAKVAATEDPGDVEEEEFLSNSTRRSKKLKAVEYARQIKDHL-- 158
            |.|.|::.|.           ::.:.:|....|.::|  ||...|....:|.:|.....:.:|  
plant    55 KVPNERTEKM-----------NSGLISTRHQVDPKKE--LSRILRTDAAVKGIERKANSEKYLTL 106

  Fly   159 --KA--NRLNEAIAVLEQRMLKEDRAKPDKYIYNLLISGCAKAGYTRKAFFLYTKMRQRGLQVTG 219
              ||  ..|:|||        ||:|.:....|:|||          ||..:...:.:        
plant   107 WPKAVLEALDEAI--------KENRWQSALKIFNLL----------RKQHWYEPRCK-------- 145

  Fly   220 GTYTSLFNACANAPSVSDGLAKAQILRENMLEKGYEPNVKNYNAMIKAYGRCGDVDTAYMLADEM 284
             |||.||....|.....    :|.:|.|.||.:|.:|.:..|.::|..||:...:|.|:... |.
plant   146 -TYTKLFKVLGNCKQPD----QASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTL-EY 204

  Fly   285 MERQLELNADTFNF--LLQACASNSEHGFRHALLTWHNMLQRGISPDYYSFNAMLRCARDCGFGD 347
            |:...:...|.|.|  |:..|..........:::.  .|...|:.....::|.::.     |:|.
plant   205 MKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVL--EMSYLGVGCSTVTYNTIID-----GYGK 262

  Fly   348 LDSMREVIDKIAPSAARKKPVLQLEKGQQDDLPSVEANTTTLPAQIEVATTASELELPNLLLPQP 412
            .....|:...:|.         .:|.|  |.||             :|.|               
plant   263 AGMFEEMESVLAD---------MIEDG--DSLP-------------DVCT--------------- 288

  Fly   413 HLGSLVA-------LEEVTRPHERFLLLGGLTGFLEHMKQHNITPDIETFTAMLEVIPPTNAAEK 470
             |.|::.       :.::...:.||.|:|             :.|||.||..::.........:|
plant   289 -LNSIIGSYGNGRNMRKMESWYSRFQLMG-------------VQPDITTFNILILSFGKAGMYKK 339

  Fly   471 --QLLTFVRKIGLKADIDFFNILIKKRSMRFDYESAKEVLLMIRTAGLRPDIVTYGVLALGCRTQ 533
              .::.|:.|.........:||:|:........|...:|...::..|::|:.:||      |   
plant   340 MCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITY------C--- 395

  Fly   534 EEARELLEQMHVAGIKMNMPILGAMLRQ 561
                .|:.....||:.:.   :.::|||
plant   396 ----SLVNAYSKAGLVVK---IDSVLRQ 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PPR_2 <157..196 CDD:289786 14/44 (32%)
PPR_2 182..231 CDD:289786 11/48 (23%)
PPR 185..215 CDD:279828 6/29 (21%)
PPR repeat 186..213 CDD:276811 6/26 (23%)
PPR repeat 219..252 CDD:276811 11/32 (34%)
PPR_1 252..284 CDD:289614 8/31 (26%)
PPR_2 256..304 CDD:289786 13/49 (27%)
PPR repeat 258..287 CDD:276811 8/28 (29%)
PPR repeat 293..324 CDD:276811 6/32 (19%)
PPR repeat 330..357 CDD:276811 4/26 (15%)
PPR repeat 485..514 CDD:276811 5/28 (18%)
PPR repeat 552..576 CDD:276811 3/10 (30%)
AT3G53170NP_001319735.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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