DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment CG4611 and AT3G49710

DIOPT Version :9

Sequence 1:	NP_647949.1	Gene:	CG4611 / 38601	FlyBaseID:	FBgn0035591	Length:	703	Species:	Drosophila melanogaster
Sequence 2:	NP_190540.1	Gene:	AT3G49710 / 824133	AraportID:	AT3G49710	Length:	721	Species:	Arabidopsis thaliana

Alignment Length:	542	Identity:	102/542 - (18%)
Similarity:	158/542 - (29%)	Gaps:	253/542 - (46%)

- Green bases have known domain annotations that are detailed below.

  Fly    69 NQNPFREEVFEELITAAPKEHQKFKPEKKPKEKSTKKVQDFGDPDTFGDAKVAATEDPGDVEEEE 133
            ||.|::.:.|.:|:                       ::...:.|.|....:.|......|....
plant     2 NQTPWKFKTFRDLL-----------------------LKSVAERDLFTGKSLHALYVKSIVASST 43

  Fly   134 FLSNS-TRRSKKLKAVEYARQ----------------IKDHLKANRLNEAIAVLEQRMLKEDRAK 181
            :|||. .....|...:.|||.                :|.:.|.::::.|      |.|.::..:
plant    44 YLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKAYAKDSKIHIA------RQLFDEIPQ 102

  Fly   182 PDKYIYNLLISGCAKAGYTRKAFFLYTKMRQRGLQVTGGTYTSLFNACANAP---------SVSD 237
            ||...||.||||.|.|..|..|..|:.:||:.|.:|.|.|.:.|..||.:..         |||.
plant   103 PDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDRVDLIKQLHCFSVSG 167

  Fly   238 GL----------------------------------------------------AKAQILRENML 250
            |.                                                    |||..|.:.|:
plant   168 GFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMI 232

  Fly   251 EKGYE------PNVKN--------------YNAMIKA---------------YGRCGDVD----- 275
            .||::      .:|.|              :..:|||               |.:||..|
plant   233 FKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDS 297

  Fly   276 -------------------TAYMLADEMME------RQL-------------------------- 289
                               :.|.:.:|:.|      ||:
plant   298 EKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPS 362

  Fly   290 ----------------------------------------------ELNADTFNFLLQACASNSE 308
                                                          ||||.:||.:::..|.:.
plant   363 QCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHG- 426

  Fly   309 HGFRHALLTWHNMLQRGISPDYYSFNAMLRCARDCGFGD-----LDSMREVIDKIAPSAARKKPV 368
            || ..|||.:..||..||:|:..:|.|:|.....||..|     .::|:|.. ||.|.|.....:
plant   427 HG-TEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETF-KIEPEAEHYSCM 489

  Fly   369 LQLEKGQQDDLPSVEANTTTLP 390
            :.| .|:...|...|.....:|
plant   490 IDL-LGRAGKLEEAERFIDAMP 510

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
CG4611	NP_647949.1	PPR_2	<157..196	CDD:289786	12/38 (32%)
		PPR_2	182..231	CDD:289786	22/48 (46%)
		PPR	185..215	CDD:279828	13/29 (45%)
		PPR repeat	186..213	CDD:276811	13/26 (50%)
		PPR repeat	219..252	CDD:276811	14/93 (15%)
		PPR_1	252..284	CDD:289614	12/90 (13%)
		PPR_2	256..304	CDD:289786	20/178 (11%)
		PPR repeat	258..287	CDD:276811	12/87 (14%)
		PPR repeat	293..324	CDD:276811	11/30 (37%)
		PPR repeat	330..357	CDD:276811	8/31 (26%)
		PPR repeat	485..514	CDD:276811
		PPR repeat	552..576	CDD:276811
AT3G49710	NP_190540.1	PPR repeat	43..71	CDD:276811	7/27 (26%)
		PPR_1	71..99	CDD:289614	5/33 (15%)
		PPR_2	72..117	CDD:289786	13/50 (26%)
		PPR repeat	76..102	CDD:276811	5/31 (16%)
		PPR_2	103..152	CDD:289786	22/48 (46%)
		PPR repeat	105..134	CDD:276811	13/28 (46%)
		PPR	106..139	CDD:273253	14/32 (44%)
		PPR_2	204..250	CDD:289786	9/45 (20%)
		PPR repeat	205..232	CDD:276811	4/26 (15%)
		PPR	206..239	CDD:273253	7/32 (22%)
		PPR repeat	240..304	CDD:276811	9/63 (14%)
		PPR_2	307..357	CDD:289786	5/49 (10%)
		PPR	310..341	CDD:279828	5/30 (17%)
		PPR repeat	311..339	CDD:276811	5/27 (19%)
		PPR_2	385..424	CDD:289786	6/38 (16%)
		PPR repeat	385..409	CDD:276811	0/23 (0%)
		PPR_2	411..459	CDD:289786	18/49 (37%)
		PPR	413..446	CDD:273253	12/34 (35%)
		PPR repeat	414..441	CDD:276811	10/28 (36%)
		PPR repeat	447..477	CDD:276811	8/29 (28%)
		PPR repeat	483..512	CDD:276811	6/29 (21%)
		DYW_deaminase	584..711	CDD:291126
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	0	0.000