DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4611 and AT3G49710

DIOPT Version :10

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_190540.1 Gene:AT3G49710 / 824133 AraportID:AT3G49710 Length:721 Species:Arabidopsis thaliana


Alignment Length:542 Identity:102/542 - (18%)
Similarity:158/542 - (29%) Gaps:253/542 - (46%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 NQNPFREEVFEELITAAPKEHQKFKPEKKPKEKSTKKVQDFGDPDTFGDAKVAATEDPGDVEEEE 133
            ||.|::.:.|.:|:                       ::...:.|.|....:.|......|....
plant     2 NQTPWKFKTFRDLL-----------------------LKSVAERDLFTGKSLHALYVKSIVASST 43

  Fly   134 FLSNS-TRRSKKLKAVEYARQ----------------IKDHLKANRLNEAIAVLEQRMLKEDRAK 181
            :|||. .....|...:.|||.                :|.:.|.::::.|      |.|.::..:
plant    44 YLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKAYAKDSKIHIA------RQLFDEIPQ 102

  Fly   182 PDKYIYNLLISGCAKAGYTRKAFFLYTKMRQRGLQVTGGTYTSLFNACANAP---------SVSD 237
            ||...||.||||.|.|..|..|..|:.:||:.|.:|.|.|.:.|..||.:..         |||.
plant   103 PDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDRVDLIKQLHCFSVSG 167

  Fly   238 GL----------------------------------------------------AKAQILRENML 250
            |.                                                    |||..|.:.|:
plant   168 GFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMI 232

  Fly   251 EKGYE------PNVKN--------------YNAMIKA---------------YGRCGDVD----- 275
            .||::      .:|.|              :..:|||               |.:||..|     
plant   233 FKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDS 297

  Fly   276 -------------------TAYMLADEMME------RQL-------------------------- 289
                               :.|.:.:|:.|      ||:                          
plant   298 EKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPS 362

  Fly   290 ----------------------------------------------ELNADTFNFLLQACASNSE 308
                                                          ||||.:||.:::..|.:. 
plant   363 QCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHG- 426

  Fly   309 HGFRHALLTWHNMLQRGISPDYYSFNAMLRCARDCGFGD-----LDSMREVIDKIAPSAARKKPV 368
            || ..|||.:..||..||:|:..:|.|:|.....||..|     .::|:|.. ||.|.|.....:
plant   427 HG-TEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETF-KIEPEAEHYSCM 489

  Fly   369 LQLEKGQQDDLPSVEANTTTLP 390
            :.| .|:...|...|.....:|
plant   490 IDL-LGRAGKLEEAERFIDAMP 510

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PLN03218 <166..>561 CDD:215636 84/428 (20%)
PPR repeat 186..213 CDD:276811 13/26 (50%)
PPR repeat 219..252 CDD:276811 14/93 (15%)
PPR repeat 258..287 CDD:276811 12/87 (14%)
PPR repeat 293..324 CDD:276811 11/30 (37%)
PPR repeat 330..357 CDD:276811 8/31 (26%)
PPR repeat 485..514 CDD:276811
PPR repeat 552..576 CDD:276811
AT3G49710NP_190540.1 PPR repeat 43..71 CDD:276811 7/27 (26%)
PPR repeat 76..102 CDD:276811 5/31 (16%)
PLN03077 <78..719 CDD:215561 86/443 (19%)
PPR repeat 105..134 CDD:276811 13/28 (46%)
PPR repeat 205..232 CDD:276811 4/26 (15%)
PPR repeat 240..304 CDD:276811 9/63 (14%)
PPR repeat 311..339 CDD:276811 5/27 (19%)
PPR repeat 385..409 CDD:276811 0/23 (0%)
PPR repeat 414..441 CDD:276811 10/28 (36%)
PPR repeat 447..477 CDD:276811 8/29 (28%)
PPR repeat 483..512 CDD:276811 6/29 (21%)
Blue background indicates that the domain is not in the aligned region.

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