DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4611 and AT3G02330

DIOPT Version :10

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_186882.2 Gene:AT3G02330 / 821115 AraportID:AT3G02330 Length:903 Species:Arabidopsis thaliana


Alignment Length:547 Identity:117/547 - (21%)
Similarity:207/547 - (37%) Gaps:152/547 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   157 HLKANRLNEAIAVLEQRMLKEDRAKPDKYIYNLLISGCAKAGYTRKAFFLYTKMRQRGLQVTGGT 221
            :.|.:.:.:|      ::|.::....::..||.:|:|.::..:..||..|:.::...||.....:
plant   326 YAKCDNMQDA------QILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEIS 384

  Fly   222 YTSLFNACANAPSVSDGLAKAQILRENMLEKGYEPNVKNYNAMIKAYGRCGDVDTAYMLADEMME 286
            .:.:|.|||....:|:||....:..::.|..    :|...||.|..||:|..:..|:.:.|||..
plant   385 LSGVFRACALVKGLSEGLQIYGLAIKSSLSL----DVCVANAAIDMYGKCQALAEAFRVFDEMRR 445

  Fly   287 RQLELNADTFNFLLQACASNSEHGFRHALLTWHNMLQRGISPDYYSFNAMLRCARDCGFGDLDSM 351
            |    :|.::|.::.|...|.: |: ..|..:.:||:..|.||.::|.::|:.   |..|.|...
plant   446 R----DAVSWNAIIAAHEQNGK-GY-ETLFLFVSMLRSRIEPDEFTFGSILKA---CTGGSLGYG 501

  Fly   352 REVIDKIAPSAARKKPVLQLEKGQQDDLPSVEANTTTLPAQIEVATTASELELPNLLLPQPHLGS 416
            .|:...|..|                   .:.:|::...:.|::.:...                
plant   502 MEIHSSIVKS-------------------GMASNSSVGCSLIDMYSKCG---------------- 531

  Fly   417 LVALEEVTRPHERFLLLGGLTGFLEHM-KQHN--------------------------------- 447
              .:||..:.|.||.....::|.:|.: |.||                                 
plant   532 --MIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRM 594

  Fly   448 ----ITPDIETFTAMLEVIPPTNAAE----KQLLTFVRKIGLKADIDFFNILIKKRSMRFDYESA 504
                ||||..|:..:|:..  .|.|.    ||:...|.|..|::|:...:.|:...|...|...:
plant   595 MEMGITPDKFTYATVLDTC--ANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDS 657

  Fly   505 KEVLLMIRTAGLRPDIVTYGVLALGCRTQ---EEARELLEQMHVAGIKMN----MPILGAMLRQG 562
            :   ||...: ||.|.||:..:..|....   |||.:|.|:|.:..||.|    :.||.|....|
plant   658 R---LMFEKS-LRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMG 718

  Fly   563 CANKSFSYVNEIIQLSLEEGLKPNEAFLRHLHNFHRGCARAIDARHPSTKTAAFKKGHSKFCDKY 627
            ..:|...|   ...:..:.||.|.   |.|..|.       :|.                     
plant   719 LIDKGLEY---FYMMKRDYGLDPQ---LPHYSNM-------VDI--------------------- 749

  Fly   628 RLYYEEQGLSGLKLEDAIAKVKERPYD 654
                  .|.|| |::.|:..::|.|::
plant   750 ------LGKSG-KVKRALELIREMPFE 769

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PLN03218 <166..>561 CDD:215636 99/443 (22%)
PPR repeat 186..213 CDD:276811 7/26 (27%)
PPR repeat 219..252 CDD:276811 8/32 (25%)
PPR repeat 258..287 CDD:276811 11/28 (39%)
PPR repeat 293..324 CDD:276811 8/30 (27%)
PPR repeat 330..357 CDD:276811 6/26 (23%)
PPR repeat 485..514 CDD:276811 5/28 (18%)
PPR repeat 552..576 CDD:276811 6/23 (26%)
AT3G02330NP_186882.2 PPR repeat 51..77 CDD:276811
PPR_2 81..126 CDD:463778
PPR repeat 85..112 CDD:276811
PPR_2 112..155 CDD:463778
PPR repeat 114..143 CDD:276811
PPR repeat 145..174 CDD:276811
PLN03077 149..901 CDD:215561 117/547 (21%)
PPR repeat 215..239 CDD:276811
PPR repeat 246..275 CDD:276811
PPR repeat 316..340 CDD:276811 3/19 (16%)
PPR repeat 349..376 CDD:276811 7/26 (27%)
PPR repeat 382..411 CDD:276811 7/28 (25%)
PPR repeat 417..446 CDD:276811 11/28 (39%)
PPR repeat 450..477 CDD:276811 7/28 (25%)
PPR repeat 483..511 CDD:276811 7/30 (23%)
PPR repeat 570..597 CDD:276811 0/26 (0%)
PPR repeat 640..667 CDD:276811 6/30 (20%)
PPR repeat 671..698 CDD:276811 8/26 (31%)
PPR repeat 704..733 CDD:276811 6/31 (19%)
PPR repeat 740..766 CDD:276811 9/60 (15%)
TPR repeat 772..802 CDD:276809
Blue background indicates that the domain is not in the aligned region.

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