DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4611 and AT3G16710

DIOPT Version :9

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_188293.2 Gene:AT3G16710 / 820923 AraportID:AT3G16710 Length:507 Species:Arabidopsis thaliana


Alignment Length:463 Identity:102/463 - (22%)
Similarity:176/463 - (38%) Gaps:103/463 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 VEYARQIKDHLKANRLNEAIAVLEQ----------------------------------RMLKED 178
            :::.|.:....|.||.:..|::.||                                  :|:|..
plant    84 IDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLG 148

  Fly   179 RAKPDKYIYNLLISGCAKAGYTRKAFFLYTKMRQRGLQVTGGTYTSLFNA-CANAPSVSDGLAKA 242
             .:||...:..|::|.........|..|:.::...|.:....|||:|... |.|.     .|..|
plant   149 -FEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNR-----HLNHA 207

  Fly   243 QILRENMLEKGYEPNVKNYNAMIKA---YGRCGDVDTAYMLADEMMERQLELNADTFNFLLQACA 304
            ..|...|...|..|||..|||::..   .||.|  |.|::|.| ||:|::|.|..||..|:.|..
plant   208 VELFNQMGTNGSRPNVVTYNALVTGLCEIGRWG--DAAWLLRD-MMKRRIEPNVITFTALIDAFV 269

  Fly   305 SNSEHGFRHALLTWHNMLQRGISPDYYSFNAMLRCARDCGFGDLDSMREVIDKIAPSAARKKPVL 369
            ...:  ...|...::.|:|..:.||.:::.:::...  |.:|.||..|::...:..:......|:
plant   270 KVGK--LMEAKELYNVMIQMSVYPDVFTYGSLINGL--CMYGLLDEARQMFYLMERNGCYPNEVI 330

  Fly   370 ------------QLEKGQ----QDDLPSVEANTTTLPAQIEVATTASELELPNLLLPQPHLGSLV 418
                        ::|.|.    :.....|.|||.|....|:          ...|:.:|.:.   
plant   331 YTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQ----------GYCLVGRPDVA--- 382

  Fly   419 ALEEVTRPHERFLLLGGLTGFLEHMKQHNITPDIETFTAMLEVIPPTNAAEKQLLTF--VRKIGL 481
              :||                ...|......|||.|:..:|:.:......||.|:.|  :||..:
plant   383 --QEV----------------FNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREM 429

  Fly   482 KADIDFFNILIKKRSMRFDYESAKEVLLMIRTAGLRPDIVTYGVLALG-CRTQ--EEARELLEQM 543
            ..:|..:.|:|:........|.|.::...:.:.|::|:::||..:..| ||..  .||..|.::|
plant   430 DINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKM 494

  Fly   544 HVAGIKMN 551
            ...|...|
plant   495 KEDGFLPN 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PPR_2 <157..196 CDD:289786 12/72 (17%)
PPR_2 182..231 CDD:289786 12/49 (24%)
PPR 185..215 CDD:279828 4/29 (14%)
PPR repeat 186..213 CDD:276811 4/26 (15%)
PPR repeat 219..252 CDD:276811 10/33 (30%)
PPR_1 252..284 CDD:289614 14/34 (41%)
PPR_2 256..304 CDD:289786 22/50 (44%)
PPR repeat 258..287 CDD:276811 13/31 (42%)
PPR repeat 293..324 CDD:276811 6/30 (20%)
PPR repeat 330..357 CDD:276811 5/26 (19%)
PPR repeat 485..514 CDD:276811 5/28 (18%)
PPR repeat 552..576 CDD:276811 102/463 (22%)
AT3G16710NP_188293.2 PLN03218 <81..>202 CDD:215636 21/118 (18%)
PPR repeat 86..112 CDD:276811 7/25 (28%)
PPR repeat 120..147 CDD:276811 1/26 (4%)
PLN03218 <146..>507 CDD:215636 94/401 (23%)
PPR repeat 155..182 CDD:276811 4/26 (15%)
PPR repeat 190..217 CDD:276811 10/31 (32%)
PPR repeat 223..252 CDD:276811 13/31 (42%)
PPR repeat 260..287 CDD:276811 6/28 (21%)
PPR repeat 295..322 CDD:276811 5/28 (18%)
PPR repeat 328..357 CDD:276811 3/28 (11%)
PPR repeat 363..392 CDD:276811 8/59 (14%)
PPR repeat 400..427 CDD:276811 7/26 (27%)
PPR repeat 433..462 CDD:276811 5/28 (18%)
PPR repeat 468..497 CDD:276811 9/28 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 104 1.000 Inparanoid score I2129
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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