DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG4611 and AT3G13880

DIOPT Version :9

Sequence 1:	NP_647949.1	Gene:	CG4611 / 38601	FlyBaseID:	FBgn0035591	Length:	703	Species:	Drosophila melanogaster
Sequence 2:	NP_188004.1	Gene:	AT3G13880 / 820601	AraportID:	AT3G13880	Length:	748	Species:	Arabidopsis thaliana

Alignment Length:	668	Identity:	130/668 - (19%)
Similarity:	218/668 - (32%)	Gaps:	216/668 - (32%)

- Green bases have known domain annotations that are detailed below.

  Fly   135 LSNSTRRSKKLKAVEYARQIKDHLKANRLNEAIAVLEQRMLKEDRAKPDKYI--YNLLISGCAKA 197
            |:|......|.:.:.:|||:.|.:                       |::.|  :|.||||..:.
plant    85 LNNLLNMYCKCRELGFARQLFDRM-----------------------PERNIISFNSLISGYTQM 126

  Fly   198 GYTRKAFFLYTKMRQRGLQVTGGTYTSLFNACANAPSVSDGLAKAQILRENMLEKGYEPNVKNYN 262
            |:..:|..|:.:.|:..|::...||......|.....:..|    ::|...::..|....|...|
plant   127 GFYEQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLG----ELLHGLVVVNGLSQQVFLIN 187

  Fly   263 AMIKAYGRCGDVDTAYMLADEMMERQ-------------------------------LELNADTF 296
            .:|..|.:||.:|.|..|.|...||.                               |.|.....
plant   188 VLIDMYSKCGKLDQAMSLFDRCDERDQVSWNSLISGYVRVGAAEEPLNLLAKMHRDGLNLTTYAL 252

  Fly   297 NFLLQACASNSEHGF----------------------RHALLTWH---NMLQRGI-------SPD 329
            ..:|:||..|...||                      |.|||..:   ..|:..|       |.:
plant   253 GSVLKACCINLNEGFIEKGMAIHCYTAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPSKN 317

  Fly   330 YYSFNAMLRCARDCGFGDLDSMREVIDKIAPSAARKKPVLQLEKGQQDDLPSVEANTTTLPAQIE 394
            ..::|||:     .||..:|   |:.|: |.|.|.|..:....:|       :|.:.:|....::
plant   318 VVTYNAMI-----SGFLQMD---EITDE-ASSEAFKLFMDMQRRG-------LEPSPSTFSVVLK 366

  Fly   395 VATTASELE---------LPNLLLPQPHLGSLVALEEVTRPHERFLLLG----GLTGFLEHMKQH 446
            ..:.|..||         ..|.......:||.:.        |.:.|:|    |:..|....||
plant   367 ACSAAKTLEYGRQIHALICKNNFQSDEFIGSALI--------ELYALMGSTEDGMQCFASTSKQ- 422

  Fly   447 NITPDIETFTAMLEVIPPTNAAE------KQLLTF---------------------------VRK 478
                ||.::|:|::........|      :||.:.                           ::.
plant   423 ----DIASWTSMIDCHVQNEQLESAFDLFRQLFSSHIRPEEYTVSLMMSACADFAALSSGEQIQG 483

  Fly   479 IGLKADIDFFNILIKKRSMRFDYES-----AKEVLLMIRTAGLRPDIVTYGVLALGCR---TQEE 535
            ..:|:.||.|. .:|..|:....:|     |.:|.:.::    .||:.||..:.....   :..|
plant   484 YAIKSGIDAFT-SVKTSSISMYAKSGNMPLANQVFIEVQ----NPDVATYSAMISSLAQHGSANE 543

  Fly   536 ARELLEQMHVAGIKMN----MPILGAMLRQGCANKSFSYVNEIIQLSLEEGLKPNEAFLRHLHNF 596
            |..:.|.|...|||.|    :.:|.|....|...:...|..   .:..:..:.|||.....|.:.
plant   544 ALNIFESMKTHGIKPNQQAFLGVLIACCHGGLVTQGLKYFQ---CMKNDYRINPNEKHFTCLVDL 605

  Fly   597 HRGCARAIDAR----------HPSTKTAAFKKGHSKFCDKYRLYYEEQGLSGLKLEDAIAKVKER 651
            .....|..||.          ||.|..|....     |..|:     ..:.|.::.:.:.:::
plant   606 LGRTGRLSDAENLILSSGFQDHPVTWRALLSS-----CRVYK-----DSVIGKRVAERLMELE-- 658

  Fly   652 PYDQFKLPPVNGMEPLKH 669
                   |..:|...|.|
plant   659 -------PEASGSYVLLH 669

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
CG4611	NP_647949.1	PPR_2	<157..196	CDD:289786	7/40 (18%)
		PPR_2	182..231	CDD:289786	15/50 (30%)
		PPR	185..215	CDD:279828	10/31 (32%)
		PPR repeat	186..213	CDD:276811	10/28 (36%)
		PPR repeat	219..252	CDD:276811	5/32 (16%)
		PPR_1	252..284	CDD:289614	11/31 (35%)
		PPR_2	256..304	CDD:289786	16/78 (21%)
		PPR repeat	258..287	CDD:276811	10/28 (36%)
		PPR repeat	293..324	CDD:276811	11/55 (20%)
		PPR repeat	330..357	CDD:276811	7/26 (27%)
		PPR repeat	485..514	CDD:276811	8/33 (24%)
		PPR repeat	552..576	CDD:276811	4/23 (17%)
AT3G13880	NP_188004.1	PLN03077	39..729	CDD:215561	130/668 (19%)
		PPR repeat	115..142	CDD:276811	9/26 (35%)
		PPR repeat	148..212	CDD:276811	16/67 (24%)
		PPR repeat	216..243	CDD:276811	0/26 (0%)
		PPR repeat	249..281	CDD:276811	6/31 (19%)
		PPR repeat	287..316	CDD:276811	6/28 (21%)
		PPR repeat	320..352	CDD:276811	12/40 (30%)
		PPR repeat	358..387	CDD:276811	4/28 (14%)
		PPR repeat	426..453	CDD:276811	5/26 (19%)
		PPR repeat	527..554	CDD:276811	6/26 (23%)
		PPR repeat	560..589	CDD:276811	4/31 (13%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	0	0.000