DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4611 and AT3G07290

DIOPT Version :10

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_187385.1 Gene:AT3G07290 / 819917 AraportID:AT3G07290 Length:880 Species:Arabidopsis thaliana


Alignment Length:614 Identity:133/614 - (21%)
Similarity:226/614 - (36%) Gaps:160/614 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   147 AVEYARQIKDHLKANRLNEAIAVLEQRMLKEDRAKPDKYIYNLLISGCAKAGYTRKAFFLYTKMR 211
            :|.|:..|....:..||.||..:.:|  :.|...:|....|.:||......|...|||.|:.:|.
plant   266 SVSYSILIHGLCEVGRLEEAFGLKDQ--MGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMI 328

  Fly   212 QRGLQVTGGTYTSLFNACANAPSVSDGLAKAQILRE------NMLEKGYEPNVKNYNAMIKAYGR 270
            .||.:....|||.|.          |||.:...:.|      .|::....|:|..|||:|..|.:
plant   329 PRGCKPNVHTYTVLI----------DGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCK 383

  Fly   271 CGDVDTAYMLADEMMERQLELNADTFNFLLQA-CASNSEHGFRHALLTWHNMLQRGISPDYYSFN 334
            .|.|..|:.|...|.:|..:.|..|||.|::. |.....:...|.|   ..||..|:|||..|:|
plant   384 DGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLL---KRMLDNGLSPDIVSYN 445

  Fly   335 AMLRCARD--CGFGDLDSMREVIDK-----IAPSAARKKPV------------------LQLEKG 374
            .::    |  |..|.:::..:::..     |.|.......:                  |.|.||
plant   446 VLI----DGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKG 506

  Fly   375 -QQDDLPSVEANTTTLPAQIEVATTASELELPNLLLPQPHLGSLVALEEVTRPHERFLLLGGLT- 437
             ..|::    ..||.:....:|..|...|.:         |.:||.:..:|.||...::|..|: 
plant   507 ISLDEV----TGTTLIDGVCKVGKTRDALFI---------LETLVKMRILTTPHSLNVILDMLSK 558

  Fly   438 --------GFLEHMKQHNITPDIETFTAMLEVIPPTN--AAEKQLLTFVRKIGLKADIDFFNILI 492
                    ..|..:.:..:.|.:.|:|.:::.:..:.  ....::|..::..|...::..:.|:|
plant   559 GCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIII 623

  Fly   493 KKRSMRFDYESAKEVLLMIRTAGLRPDIVTYGVLALGC-------RTQEEARELLEQMHVAGIKM 550
            .........|.|:::|..::.:|:.|:.|||.|:..|.       |..|..|.::|:    |.::
plant   624 NGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVER----GYEL 684

  Fly   551 NMPILGAMLRQG---------------------------CANKSFSYV----------------- 571
            |..|..::| ||                           |.|:..|.|                 
plant   685 NDRIYSSLL-QGFVLSQKGIDNSEESTVSDIALRETDPECINELISVVEQLGGCISGLCIFLVTR 748

  Fly   572 ----------NEIIQLSLEEGLKPNEAFLRHLHNF-----HRGCARAIDARHPSTKTAAFKKGHS 621
                      |:::|..||.|:...:|....:.::     |..|...|.....|....:||    
plant   749 LCKEGRTDESNDLVQNVLERGVFLEKAMDIIMESYCSKKKHTKCMELITLVLKSGFVPSFK---- 809

  Fly   622 KFCDKYRLYYEEQGLSGLKLEDAIAKVKE 650
            .||         ..:.|||.|....:.:|
plant   810 SFC---------LVIQGLKKEGDAERARE 829

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PLN03218 <166..>561 CDD:215636 102/445 (23%)
PPR repeat 186..213 CDD:276811 9/26 (35%)
PPR repeat 219..252 CDD:276811 9/38 (24%)
PPR repeat 258..287 CDD:276811 11/28 (39%)
PPR repeat 293..324 CDD:276811 9/31 (29%)
PPR repeat 330..357 CDD:276811 5/28 (18%)
PPR repeat 485..514 CDD:276811 5/28 (18%)
PPR repeat 552..576 CDD:276811 9/77 (12%)
AT3G07290NP_187385.1 PPR repeat 128..154 CDD:276811
PPR repeat 160..189 CDD:276811
PPR repeat 198..224 CDD:276811
PPR_2 234..277 CDD:463778 3/10 (30%)
PPR repeat 234..259 CDD:276811
PLN03218 <264..>627 CDD:215636 90/392 (23%)
PPR repeat 268..295 CDD:276811 7/28 (25%)
PPR repeat 301..330 CDD:276811 9/28 (32%)
PPR repeat 336..365 CDD:276811 9/38 (24%)
PPR repeat 371..400 CDD:276811 11/28 (39%)
PPR repeat 406..435 CDD:276811 9/31 (29%)
PPR repeat 441..467 CDD:276811 5/29 (17%)
PPR repeat 476..505 CDD:276811 2/28 (7%)
PPR repeat 511..540 CDD:276811 8/41 (20%)
PPR repeat 548..575 CDD:276811 3/26 (12%)
PPR repeat 583..610 CDD:276811 3/26 (12%)
PPR_2 614..663 CDD:463778 12/48 (25%)
PPR repeat 616..645 CDD:276811 5/28 (18%)
PPR_2 649..696 CDD:463778 15/51 (29%)
PPR repeat 651..680 CDD:276811 8/28 (29%)
PPR repeat 745..768 CDD:276811 3/22 (14%)
PPR repeat 774..802 CDD:276811 4/27 (15%)
PPR repeat 808..837 CDD:276811 9/35 (26%)
PPR repeat 846..875 CDD:276811
Blue background indicates that the domain is not in the aligned region.

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